UFO01612.5prime Sequence
1077 bp (986 high quality bases) assembled on 2008-10-17
> UFO01612.5prime
CAGTCGACATGTCCAGCAAGATGCGAAACCTCAAGGGACGCGAGGTAGTC
ATAGGCATCTTCGACTACAAGCCTTTTATGCTATTGGATTATGAAAAGCC
ACCATTATATTATGATCGTTTTATGAACACGACGGATGTAACCATTGATG
GAACAGATATTCAACTAATGCTCATTTTCTGCGAGTTGTACAACTGCACC
ATTCAGGTGGACACATCTGAACCATACGACTGGGGTGACATCTACTTGAA
TGCCTCGGGCTATGGTCTGGTTGGAATGATCCTCGATAGACGAAACGATT
ACGGAGTAGGGGGCATGTATTTGTGGTACGAGGCGTACGAGTATATGGAC
ATGACTCATTTTCTGGGACGATCTGGAGTAACCTGTCTGGTGCCCGCTCC
GAACCGTTTAATCAGCTGGACGCTCCTGCTCCGACCATTCCAGTTTGTCC
TCTGGATGTGCGTGATGCTCTGCCTTCTGCTCGAGAGCTTAGCTCTTGGT
ATAACCCGTCGCTGGGAACACTCGTCGGTTGCGGCAGGCAATTCCTGGAT
CAGTAGTCTGCGCTTCGGTTGCATCAGTACGCTGAAACTTTTCGTAAATC
AGAGCACCAATTATGTGACCAGCTCGTATGCTCTAAGAACCGTCCTAGTG
GCCAGCTACATGATCGACATTATATTGACCACTGTGTACAGTGGCGGTCT
GGCGGCCATCCTCACTTTGCCCACTTTAGAGGAAGCGGCGGACTCTCGCC
AACGTCTCTTCGACCATAAGCTCATTTGGACGGGGACTTCACAGGCCTGG
ATTACCACCATTGACGAGCGATCGGCCGACCCAGTTCTTCTTGGTTTAAT
GGAGCATTACCGAGTTTACGATGCCAATTTAATATCCGCCTTCTCGCCCA
CGGAGCAAATGGGATTTGTCGTCGAGCCGCCTTCAGTTTGGTCATTTGGG
CACCCCCGAGCTAATAGAAAACGATGCCCTAAAGCCGCTGAACTTATGTG
ATGAATTTTACTTGCATCGCTGCATGCCTAGCATGTCGACGACAGCATGA
CTCTGTGCTGATAGTTTGGATACATGT
UFO01612.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ir76a-RE | 1991 | CG42584-RE | 640..1646 | 9..1013 | 4850 | 99 | Plus |
| Ir76a-RA | 1722 | CG42584-RA | 371..1377 | 9..1013 | 4850 | 99 | Plus |
| Ir76a-RB | 1761 | CG8533-RB | 410..1416 | 9..1013 | 4850 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19802335..19802840 | 325..830 | 2530 | 100 | Plus |
| 3L | 28110227 | 3L | 19802898..19803058 | 831..992 | 700 | 96.9 | Plus |
| 3L | 28110227 | 3L | 19801987..19802114 | 89..216 | 625 | 99.2 | Plus |
| 3L | 28110227 | 3L | 19802161..19802277 | 212..328 | 570 | 99.1 | Plus |
| 3L | 28110227 | 3L | 19801845..19801929 | 9..93 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:16:49 has no hits.
UFO01612.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:38 Download gff for
UFO01612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ir76a-RB | 403..1416 | 1..1013 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:33:16 Download gff for
UFO01612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8533-RA | 437..1450 | 1..1013 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:00 Download gff for
UFO01612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ir76a-RB | 403..1416 | 1..1013 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:00 Download gff for
UFO01612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19802898..19803065 | 831..998 | 96 | -> | Plus |
| 3L | 19801838..19801928 | 1..92 | 95 | -> | Plus |
| 3L | 19801991..19802114 | 93..216 | 100 | -> | Plus |
| 3L | 19802166..19802274 | 217..325 | 100 | -> | Plus |
| 3L | 19802336..19802840 | 326..830 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:38 Download gff for
UFO01612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19794938..19795028 | 1..92 | 95 | -> | Plus |
| arm_3L | 19795091..19795214 | 93..216 | 100 | -> | Plus |
| arm_3L | 19795266..19795374 | 217..325 | 100 | -> | Plus |
| arm_3L | 19795436..19795940 | 326..830 | 100 | -> | Plus |
| arm_3L | 19795998..19796165 | 831..998 | 96 | -> | Plus |
