Clone UFO01614 Report

Search the DGRC for UFO01614

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:16
Well:14
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG5445-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO01614.5prime Sequence

828 bp (723 high quality bases) assembled on 2008-10-17

> UFO01614.5prime
CAGTCGACATGGATGTGGAGGAGAACTACGAAAACGCCGCCGAGATGCAG
AACATGAACATGAATCTGAATCTAAATCCGAATCCGAATCCAAATTCGGA
CAGCCAGCAGCAGCAGCAACAACAGATGCAATGTGAACCGTTATTCGGGC
TCACAACCAATACAACAACAACCACAAATCCCATGATGGCCATTCCCCTG
CCCGCGCCCCCAGGGCCGCACTCCGCTCCGAACAACAGTCCAAATTCGAA
TGCGAATCCCAACTCAAATCTGAGTCCCAGTCCATCCGCAACAACCGCTA
ACGCATCCGCATCCACGATCAAGTGTCTACCGACGAACGACTTCGATATC
GACTCCCTGTTGCTGCAACAGTTCAGCTGTATGGGCACCACGGACCACGA
AGACCTCATCAGCCAGTTTCAGAGCCTAATGAACAACCAGATGAACCGGG
AATCGGCCAGGTTTTACCTAGAGATGAGTAACTGGAGCCTGCAGACGGCG
GTGGGCTGCTATCTGGACTTCTGCAGCTTACAGTCGCTGCCTTCGATGAA
GATCGTCCAGGAGAAGCAAGTGAATGCTCAGCAGCAAGCGTTTCAGCTGC
AGAACGATGGCACCGAGCGCTGGCCGAACAACTGCTATCTGACCTCGCCC
ATCCAGACGCAGCGCATCATGTGCCGCCTACGTCGGCGAAACTTGTGATA
TCTGCGATATGATGCCCACGCAGCCGCGACATGTGGCGGCTGTGCACTCA
ATGCTGTACTTGGCGATGCATTTGATAATCCGCCGTACCAGCACAGACGA
CTGCACACGATTGTGCACTGATACGTCG

UFO01614.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5445-RG 2047 CG5445-RG 494..1279 5..774 3535 97.8 Plus
CG5445-RF 1740 CG5445-RF 187..972 5..774 3535 97.8 Plus
CG5445-RD 1995 CG5445-RD 442..1227 5..774 3535 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17302911..17303391 5..485 2390 99.8 Plus
X 23542271 X 17304074..17304348 484..748 970 95.3 Plus
Blast to na_te.dros performed 2014-11-28 19:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2632..2668 106..142 122 81.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2420 100..177 114 65.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2834..2867 100..131 111 85.3 Plus
TART-A 13424 TART-A 13424bp 8635..8667 100..132 111 81.8 Plus
roo 9092 roo DM_ROO 9092bp 1064..1135 105..177 110 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6845..6919 105..177 109 62.7 Plus

UFO01614.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:45 Download gff for UFO01614.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5445-RD 439..1221 1..769 97   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:47:21 Download gff for UFO01614.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5445-RA 381..1163 1..769 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:59 Download gff for UFO01614.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5445-RD 439..1221 1..769 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:59 Download gff for UFO01614.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17302908..17303390 1..484 99 -> Plus
X 17304075..17304348 485..748 96 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:45 Download gff for UFO01614.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17196941..17197423 1..484 99 -> Plus
arm_X 17198108..17198381 485..748 96 == Plus