UFO01614.5prime Sequence
828 bp (723 high quality bases) assembled on 2008-10-17
> UFO01614.5prime
CAGTCGACATGGATGTGGAGGAGAACTACGAAAACGCCGCCGAGATGCAG
AACATGAACATGAATCTGAATCTAAATCCGAATCCGAATCCAAATTCGGA
CAGCCAGCAGCAGCAGCAACAACAGATGCAATGTGAACCGTTATTCGGGC
TCACAACCAATACAACAACAACCACAAATCCCATGATGGCCATTCCCCTG
CCCGCGCCCCCAGGGCCGCACTCCGCTCCGAACAACAGTCCAAATTCGAA
TGCGAATCCCAACTCAAATCTGAGTCCCAGTCCATCCGCAACAACCGCTA
ACGCATCCGCATCCACGATCAAGTGTCTACCGACGAACGACTTCGATATC
GACTCCCTGTTGCTGCAACAGTTCAGCTGTATGGGCACCACGGACCACGA
AGACCTCATCAGCCAGTTTCAGAGCCTAATGAACAACCAGATGAACCGGG
AATCGGCCAGGTTTTACCTAGAGATGAGTAACTGGAGCCTGCAGACGGCG
GTGGGCTGCTATCTGGACTTCTGCAGCTTACAGTCGCTGCCTTCGATGAA
GATCGTCCAGGAGAAGCAAGTGAATGCTCAGCAGCAAGCGTTTCAGCTGC
AGAACGATGGCACCGAGCGCTGGCCGAACAACTGCTATCTGACCTCGCCC
ATCCAGACGCAGCGCATCATGTGCCGCCTACGTCGGCGAAACTTGTGATA
TCTGCGATATGATGCCCACGCAGCCGCGACATGTGGCGGCTGTGCACTCA
ATGCTGTACTTGGCGATGCATTTGATAATCCGCCGTACCAGCACAGACGA
CTGCACACGATTGTGCACTGATACGTCG
UFO01614.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5445-RG | 2047 | CG5445-RG | 494..1279 | 5..774 | 3535 | 97.8 | Plus |
CG5445-RF | 1740 | CG5445-RF | 187..972 | 5..774 | 3535 | 97.8 | Plus |
CG5445-RD | 1995 | CG5445-RD | 442..1227 | 5..774 | 3535 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17302911..17303391 | 5..485 | 2390 | 99.8 | Plus |
X | 23542271 | X | 17304074..17304348 | 484..748 | 970 | 95.3 | Plus |
Blast to na_te.dros performed 2014-11-28 19:54:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2632..2668 | 106..142 | 122 | 81.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2420 | 100..177 | 114 | 65.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2834..2867 | 100..131 | 111 | 85.3 | Plus |
TART-A | 13424 | TART-A 13424bp | 8635..8667 | 100..132 | 111 | 81.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1064..1135 | 105..177 | 110 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6919 | 105..177 | 109 | 62.7 | Plus |
UFO01614.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:45 Download gff for
UFO01614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5445-RD | 439..1221 | 1..769 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:47:21 Download gff for
UFO01614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5445-RA | 381..1163 | 1..769 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:59 Download gff for
UFO01614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5445-RD | 439..1221 | 1..769 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:59 Download gff for
UFO01614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17302908..17303390 | 1..484 | 99 | -> | Plus |
X | 17304075..17304348 | 485..748 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:45 Download gff for
UFO01614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17196941..17197423 | 1..484 | 99 | -> | Plus |
arm_X | 17198108..17198381 | 485..748 | 96 | == | Plus |