UFO01616.5prime Sequence
1098 bp (998 high quality bases) assembled on 2008-10-17
> UFO01616.5prime
CAGTCGACATGGGCAGCGAAACGGATTTTGACGCAAAGAATGGAATCGTG
GACGGACCAACCCCGCCCCACACCGAGCTGGCGGCCCTCTATAAGCAGAG
CTTTGCCTACTACACCTTCCGTGTGCGTCTGCCTTCGACCTTGGCCACCA
TCGCGGATTCCCTAGTCAAGGACAAGGACGTCCTCCTGGCCACATATGGC
GCGGCAGCGGAAGCCGATATTGAACAAACTACAAAGGAGGTTAGACAGCT
GCGGGATGACATCCTGAGCAACGGTCCTTTACTGCCCTTTGGTGAAAATG
ATTCCGACTCTGAAGTGTGGAATGCATTCCTGGAAAAACTGCCCAAGGAG
AAGAGAACCTACTTTTCCGTCTGCTGGCTGTACGCCGAGTGTTATATGTA
CCGCAAAATCTCATCTATTTTCCGGGCCACAGCCCATCTGGCCGCCTACG
ACTACTTCAGCCAGCAGAAACAGACGGCGACCAAACTGAGCGTGGACGCC
ATGCTGGCGGTGGCCAAGGCTACGCGGCACAATGAACGAAACTCGGACAC
CTTCCGCCAGTTGATCAAACTCAATTTGTGGGGCAACCGATGCGATCTGT
CCATAACCTCCGGCAAACAGGTGAAGCCCACTGGCAATGCCTTTGACCAA
GTTACGGATTTGGAGGAGAAGCTACTAATCGACGGCACCGCGGAGGTATG
GAAAGCCCTGGACGGAGCCTCCGGAGAGGGCATTGTGGACATCATTTTCG
ACAACGCCGGCTATGAGCTGTACACGGATCTCATTCTGGCTGAGTACATT
ATCGACAAGGGATTGGCTGCCAAGGTGCGCTTCAATCCCAAGGCCATTCC
TTGCTCATTTCGGACGTGATGGAGCACGACTTCCACTGGGCACTTCAATT
TCTGGCCGACCATCCGGATCCTGTGCTGGTGAGTCGGAAAAAATGGCAGC
GTTTGACGACGAGGCAGTTCGAGCTTTCGCCACTGGACCCTTTGGACGAG
TCCTACGAGTTCTATCGCATGCAAAGGTAATCCCTCCTCTCGACGCTGAG
GAGGCCCACTGTTATCTCAAGAGAACTCACTTTCGCAGTGTAAGGACT
UFO01616.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11474-RC | 1776 | CG11474-RC | 139..1183 | 4..1036 | 4865 | 98.5 | Plus |
| CG11474-RA | 1520 | CG11474-RA | 64..1108 | 4..1036 | 4865 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22071901..22072633 | 1022..300 | 3180 | 97.8 | Minus |
| 2R | 25286936 | 2R | 22072961..22073067 | 204..98 | 535 | 100 | Minus |
| 2R | 25286936 | 2R | 22072798..22072895 | 300..203 | 490 | 100 | Minus |
| 2R | 25286936 | 2R | 22073211..22073305 | 98..4 | 460 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:08:48 has no hits.
UFO01616.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:55 Download gff for
UFO01616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11474-RA | 62..1118 | 1..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:47:23 Download gff for
UFO01616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11474-RA | 137..1193 | 1..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:29 Download gff for
UFO01616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11474-RA | 62..1118 | 1..1044 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:29 Download gff for
UFO01616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22071901..22072632 | 301..1022 | 98 | <- | Minus |
| 2R | 22072798..22072894 | 204..300 | 100 | <- | Minus |
| 2R | 22072962..22073067 | 98..203 | 100 | <- | Minus |
| 2R | 22073212..22073306 | 1..97 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:55 Download gff for
UFO01616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17959406..17960137 | 301..1022 | 98 | <- | Minus |
| arm_2R | 17960303..17960399 | 204..300 | 100 | <- | Minus |
| arm_2R | 17960467..17960572 | 98..203 | 100 | <- | Minus |
| arm_2R | 17960717..17960811 | 1..97 | 96 | | Minus |
