UFO01617.5prime Sequence
1108 bp (1021 high quality bases) assembled on 2008-10-17
> UFO01617.5prime
CAGTCGACATGATAGCCCTACCCGACACAGATAGCGAGGATGAGCTGCCA
CCCGGCTGGGAGGAACGTGCCACCGATGACGGCACCGTTTGCTATGTGAA
CCAGCAGGGAAAAACATCACAGTGGACACATCCACGTACGGGTCGCTCCA
AACGGATCACGGGCGAATTACCCTTGGGCTGGGAGAAGTACTACGATGAG
CAGGGAAAGCGTTTCATGTTCCTCAACAAGGAGACGCAGCAACGAACGAA
TGTGGATCCTCGTTTGGCATTCGCCGTGGAGGAGCCCACACAGAATGTGG
CCCAGGTGCGCCAGCGATTTGACTCCTGTTCGACGGCACTGCAGGTGCTG
CACGGCAAGGATTTGCATGGACGCACCGCGCTGATAACGGGCGCAAATTG
TGGCATTGGCTACGAGACGGCTCGTTCGCTCGCCCATCACGGCTGTGAGA
TCATCTTCGCCTGCCGGAACAGATCCTCCGCAGAGGCGGCCATCGAAAGG
ATTGCCCAGGAGCGACCTGCAGCACGTTCCCGCTGTCGATTCGCCGCTCT
CGACTTGAGCTCTTTGCGTTCAGTTCAGCGATTTGTGGAAGAAATTAAGC
AGAGTGTTAGCCACATTGATTATCTCATCCTTAATGCCGGAGTATTCGCA
CTGCCCTACACGAGGACCGTGGATGGTCTGGAGACCACATTCCAGGTCTC
GCACCTGTCGCATTTCTACCTCACATTGCAACTGGAGACACTGTTTGACT
ACAAAACACGGATCATTGTGCTGTCATCCGAGTCGCACAGATTTGCCAAC
CTGCCCGTGGAGAATCTGGCAGTGCATCACCTTTCGCCGCCGCCGGAGAA
ATACTGGAGCATGATGGCCTACAACAATGCCAAGCTATGCAATGTCTTGT
TCGCCCAGGAGCTCGCCCAGCGTTGGAAGCAGCGAGGCATTTCTGTTTTT
AGCCTGCATCCGGGCAATATGTGTCCAGCGATTTGTCACGAAACTATTGG
TCTACCGCCTGCTCTTTGCCATGGGGCGTCCTCACAGTCGCTGCAACAGC
GGCTGCCACGAGTATCTACTGGGCGACGGCCACGACTGACGATGTCTGAC
TGACTCAC
UFO01617.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Wwox-RB | 1440 | CG7221-RB | 94..1179 | 4..1082 | 5215 | 99 | Plus |
| Wwox-RA | 1502 | CG7221-RA | 94..1179 | 4..1082 | 5215 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8003525..8004034 | 610..101 | 2550 | 100 | Minus |
| 2L | 23513712 | 2L | 8003284..8003465 | 790..609 | 910 | 100 | Minus |
| 2L | 23513712 | 2L | 8000304..8000436 | 920..788 | 665 | 100 | Minus |
| 2L | 23513712 | 2L | 8004097..8004193 | 100..4 | 470 | 99 | Minus |
| 2L | 23513712 | 2L | 8000124..8000239 | 1031..918 | 450 | 96.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:55:05 has no hits.
UFO01617.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:48 Download gff for
UFO01617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wwox-RA | 91..1200 | 1..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:47:24 Download gff for
UFO01617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wwox-RA | 72..1181 | 1..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:03 Download gff for
UFO01617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wwox-RA | 91..1200 | 1..1098 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:03 Download gff for
UFO01617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8000108..8000236 | 921..1043 | 93 | <- | Minus |
| 2L | 8000304..8000433 | 791..920 | 100 | <- | Minus |
| 2L | 8003284..8003463 | 611..790 | 100 | <- | Minus |
| 2L | 8003525..8004034 | 101..610 | 100 | <- | Minus |
| 2L | 8004097..8004195 | 1..100 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:48 Download gff for
UFO01617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8000108..8000236 | 921..1043 | 93 | <- | Minus |
| arm_2L | 8000304..8000433 | 791..920 | 100 | <- | Minus |
| arm_2L | 8003284..8003463 | 611..790 | 100 | <- | Minus |
| arm_2L | 8003525..8004034 | 101..610 | 100 | <- | Minus |
| arm_2L | 8004097..8004195 | 1..100 | 97 | | Minus |
