Clone UFO01618 Report

Search the DGRC for UFO01618

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:16
Well:18
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptstai-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO01618.5prime Sequence

1128 bp (1005 high quality bases) assembled on 2008-10-17

> UFO01618.5prime
CAGTCGACATGCTGATTGGATTAGTACGCGACTCGGTGATGCAGTGCTTC
TGCCACACGTGCCGAGCACCTGGAATTCTGCCAGCGGTGTCAAGAAGATC
TGCGCCAATCAAGAAAAATAATAAGATTCGCTCCAAGCAGCCGCGTCTCA
GCAAGAAAGTTAAATTTATTACCACAGAGATTCGCTGCCAGGAGAAGTCC
CGCGGGGGATTGAGCTATGAGGTCATCCTGGCCGAACCGGCACCCAATGT
GGCCGTTCCAAAACGACCGGTCACCCCTGGCAAGAACGTTAGCGTCGAGG
AGATTGAGCAGAAACTTAAGGCGGCCGAGGAACGTCGCATTTCTCTAGAA
GCCAAGAAGATGGCTGACATCTCCACTAAGCTGGCTAAAGTCGAGGAGGC
GACTCGCAAAAAGGATGAGATCACCAATGAGTTTATTACTCAGACCAAGG
AGCAGCTGGAGTCGAAAATGGAGCTGCATGTGGAGAAGCGAGAGGCCATC
ATCAGTGACATGAAGGAGAAGCTAAAGATCCATGCCCAGGATATCGAAAA
GACGCGTGAGACTCTTGAGCAGCAGAAGGCCAACGAGCAGAAGGCAATCG
AGGAAAAGTTGAAGATTGCTCAGTCTCTTCGCGATGAGAATATCAAGAAA
ATGTTGGATCGCCTAAAGGAGCATGAACGTCGCGCTGAGCTCGTGCGCCA
GAACAAGGCCCAGGCCCAGGATTTGGATGGTCAGCAGAGCGCCATTGCCT
CCTCAGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCG
GCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTA
CTGGATCTATCACAGAGTCCAGCGAGCTCGATAATCAAATTACGCCCCGC
CCTGCCACTCATCGCAGTACTGTTTGTTATTCATTAGGCATTCTGCCGAC
ATGGGAGCCACTCACAAACGCATGATTGAACTGATCGCAGCGGCATTAGA
ACTTGGCGCCTGCCTATATATTTGGCCA

UFO01618.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
stai-RA 2067 CG31641-RA 480..1227 9..756 3740 100 Plus
stai-RE 2395 CG31641-RE 652..1317 9..674 3330 100 Plus
stai-RB 2977 CG31641-RB 480..1145 9..674 3330 100 Plus
stai-RE 2395 CG31641-RE 1474..1555 675..756 410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6122005..6122190 342..527 930 100 Plus
2L 23513712 2L 6121774..6121943 172..341 850 100 Plus
2L 23513712 2L 6122260..6122411 524..675 760 100 Plus
2L 23513712 2L 6113029..6113113 87..171 425 100 Plus
2L 23513712 2L 6122978..6123059 675..756 410 100 Plus
2L 23513712 2L 6110146..6110224 9..87 395 100 Plus
Blast to na_te.dros performed 2014-11-28 23:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
Tirant 8526 Tirant TIRANT 8526bp 7724..7808 495..579 110 58.8 Plus

UFO01618.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:19 Download gff for UFO01618.5prime
Subject Subject Range Query Range Percent Splice Strand
stai-RA 469..1233 1..762 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:47:27 Download gff for UFO01618.5prime
Subject Subject Range Query Range Percent Splice Strand
stai-RA 455..1219 1..762 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:09 Download gff for UFO01618.5prime
Subject Subject Range Query Range Percent Splice Strand
stai-RA 469..1233 1..762 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:09 Download gff for UFO01618.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6110135..6110224 1..87 95 -> Plus
2L 6113030..6113113 88..171 100 -> Plus
2L 6121774..6121943 172..341 100 -> Plus
2L 6122005..6122190 342..527 100 -> Plus
2L 6122264..6122410 528..674 100 -> Plus
2L 6122978..6123065 675..762 97 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:19 Download gff for UFO01618.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6110135..6110224 1..87 95 -> Plus
arm_2L 6113030..6113113 88..171 100 -> Plus
arm_2L 6121774..6121943 172..341 100 -> Plus
arm_2L 6122005..6122190 342..527 100 -> Plus
arm_2L 6122264..6122410 528..674 100 -> Plus
arm_2L 6122978..6123065 675..762 97 == Plus