UFO01618.5prime Sequence
1128 bp (1005 high quality bases) assembled on 2008-10-17
> UFO01618.5prime
CAGTCGACATGCTGATTGGATTAGTACGCGACTCGGTGATGCAGTGCTTC
TGCCACACGTGCCGAGCACCTGGAATTCTGCCAGCGGTGTCAAGAAGATC
TGCGCCAATCAAGAAAAATAATAAGATTCGCTCCAAGCAGCCGCGTCTCA
GCAAGAAAGTTAAATTTATTACCACAGAGATTCGCTGCCAGGAGAAGTCC
CGCGGGGGATTGAGCTATGAGGTCATCCTGGCCGAACCGGCACCCAATGT
GGCCGTTCCAAAACGACCGGTCACCCCTGGCAAGAACGTTAGCGTCGAGG
AGATTGAGCAGAAACTTAAGGCGGCCGAGGAACGTCGCATTTCTCTAGAA
GCCAAGAAGATGGCTGACATCTCCACTAAGCTGGCTAAAGTCGAGGAGGC
GACTCGCAAAAAGGATGAGATCACCAATGAGTTTATTACTCAGACCAAGG
AGCAGCTGGAGTCGAAAATGGAGCTGCATGTGGAGAAGCGAGAGGCCATC
ATCAGTGACATGAAGGAGAAGCTAAAGATCCATGCCCAGGATATCGAAAA
GACGCGTGAGACTCTTGAGCAGCAGAAGGCCAACGAGCAGAAGGCAATCG
AGGAAAAGTTGAAGATTGCTCAGTCTCTTCGCGATGAGAATATCAAGAAA
ATGTTGGATCGCCTAAAGGAGCATGAACGTCGCGCTGAGCTCGTGCGCCA
GAACAAGGCCCAGGCCCAGGATTTGGATGGTCAGCAGAGCGCCATTGCCT
CCTCAGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCG
GCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTA
CTGGATCTATCACAGAGTCCAGCGAGCTCGATAATCAAATTACGCCCCGC
CCTGCCACTCATCGCAGTACTGTTTGTTATTCATTAGGCATTCTGCCGAC
ATGGGAGCCACTCACAAACGCATGATTGAACTGATCGCAGCGGCATTAGA
ACTTGGCGCCTGCCTATATATTTGGCCA
UFO01618.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stai-RA | 2067 | CG31641-RA | 480..1227 | 9..756 | 3740 | 100 | Plus |
stai-RE | 2395 | CG31641-RE | 652..1317 | 9..674 | 3330 | 100 | Plus |
stai-RB | 2977 | CG31641-RB | 480..1145 | 9..674 | 3330 | 100 | Plus |
stai-RE | 2395 | CG31641-RE | 1474..1555 | 675..756 | 410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6122005..6122190 | 342..527 | 930 | 100 | Plus |
2L | 23513712 | 2L | 6121774..6121943 | 172..341 | 850 | 100 | Plus |
2L | 23513712 | 2L | 6122260..6122411 | 524..675 | 760 | 100 | Plus |
2L | 23513712 | 2L | 6113029..6113113 | 87..171 | 425 | 100 | Plus |
2L | 23513712 | 2L | 6122978..6123059 | 675..756 | 410 | 100 | Plus |
2L | 23513712 | 2L | 6110146..6110224 | 9..87 | 395 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:30:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tirant | 8526 | Tirant TIRANT 8526bp | 7724..7808 | 495..579 | 110 | 58.8 | Plus |
UFO01618.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:19 Download gff for
UFO01618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RA | 469..1233 | 1..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:47:27 Download gff for
UFO01618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RA | 455..1219 | 1..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:09 Download gff for
UFO01618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RA | 469..1233 | 1..762 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:09 Download gff for
UFO01618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6110135..6110224 | 1..87 | 95 | -> | Plus |
2L | 6113030..6113113 | 88..171 | 100 | -> | Plus |
2L | 6121774..6121943 | 172..341 | 100 | -> | Plus |
2L | 6122005..6122190 | 342..527 | 100 | -> | Plus |
2L | 6122264..6122410 | 528..674 | 100 | -> | Plus |
2L | 6122978..6123065 | 675..762 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:19 Download gff for
UFO01618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6110135..6110224 | 1..87 | 95 | -> | Plus |
arm_2L | 6113030..6113113 | 88..171 | 100 | -> | Plus |
arm_2L | 6121774..6121943 | 172..341 | 100 | -> | Plus |
arm_2L | 6122005..6122190 | 342..527 | 100 | -> | Plus |
arm_2L | 6122264..6122410 | 528..674 | 100 | -> | Plus |
arm_2L | 6122978..6123065 | 675..762 | 97 | == | Plus |