UFO01620.5prime Sequence
1119 bp (985 high quality bases) assembled on 2008-10-17
> UFO01620.5prime
CAGTCGACATGAAGTTAACTTATATTTTGTTAATCTGCGCTTTTGTGGCC
GCCTCCGCTGCCAGCGATCCGAAAGTGAAGATTGGCATTAAGAAGCGGGT
GGAGAACTGCACCCGGAAGGCCAAGGGCGGCGATCTCGTCCACGTGCACT
ACAGAGGAGCACTGCAGGATGGAACAGAGTTCGATAGCAGCTACTCCCGC
GGCACTCCCTTCTCCTTTACCCTGGGAGCTCGGCAGGTGATCAAGGGCTG
GGATCAGGGAATCCTTGGTATGTGTGAGGGTGAGCAGCGAAAGCTGACGA
TTCCGCCTGAGCTGGGATACGGAGCCAGTGGAGCGGGTGGCGGAAAGATT
CCCCCCAATGCGGTGCTCGTCTTCGATACGGAGTTGGTAAAAATCGAACC
GCGCTCTGGATCTGAAGAGCTGGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAAT
CACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACC
AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGA
GTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGAT
ATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCAT
TAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGA
ATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCAT
GGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAA
AACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCA
ATAAACCCTTTAGGGAAATAGGCCAGGTTTCACCGTAACACGCCACATCT
TGCGAATATATGGTGTAGAAACTGCCGGAAATCGTCGTGTTATCACTCAG
AGCGATGAAAACGTTTCAGTTGCTTCATGAAAACGGTGTAACAAGGTGAA
CACATATCCATATCACCAGCTCACGTCTTTCATTGCATACGAATTCGGAT
GACATCCTTCAGCGGGCAG
UFO01620.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14715-RA | 640 | CG14715-RA | 62..475 | 9..422 | 2070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11674492..11674758 | 156..422 | 1335 | 100 | Plus |
| 3R | 32079331 | 3R | 11674282..11674429 | 9..156 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:28:21 has no hits.
UFO01620.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:15 Download gff for
UFO01620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14715-RA | 62..481 | 9..428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:47:39 Download gff for
UFO01620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14715-RA | 64..483 | 9..428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:38 Download gff for
UFO01620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14715-RA | 62..481 | 9..428 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:38 Download gff for
UFO01620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11674282..11674428 | 9..155 | 100 | -> | Plus |
| 3R | 11674492..11674758 | 156..422 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:15 Download gff for
UFO01620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7500004..7500150 | 9..155 | 100 | -> | Plus |
| arm_3R | 7500214..7500480 | 156..422 | 100 | == | Plus |
