UFO01622.5prime Sequence
1077 bp (977 high quality bases) assembled on 2008-10-17
> UFO01622.5prime
CAGTCGACATGTCGCATCTGGTTCACCTGACCGTCCTGCTCCTAGTGGGC
ATCCTCTGCCTGGGCGCCACCAGCGCCAAGCCGCACGAGGAGATCAACAG
GGACCACGCCGCCGAGCTGGCCAACGAGTGCAAGGCTGAGACGGGAGCCA
CCGATGAGGATGTGGAGCAGCTGATGAGCCACGACCTGCCCGAGAGACAC
GAGGCCAAGTGCCTGCGCGCCTGCGTGATGAAAAAGCTGCAGATAATGGA
TGAATCCGGTAAGCTGAACAAGGAACACGCCATCGAGTTGGTCAAGGTCA
TGAGCAAGCACGATGCAGAGAAGGAAGACGCTCCCGCCGAGGTGGTGGCC
AAGTGCGAGGCCATCGAGACACCCGAGGATCATTGCGACGCTGCCTTCGC
CTACGAGGAATGCATTTACGAGCAAATGAAGGAGCATGGACTCGAGCTGG
AGGAGCACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAG
GAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCC
GGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATT
ACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCC
CGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG
ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCAT
CAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGG
CGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTC
ACCCAGGGATTGGCTGAGACGAAAAACATATTTCTCAATAAACCCTTTAG
GAAATAGCAGTTTTCACGTACACGCCACATCTGCGAATATTGTGTAGAAC
TGCGAAATCGTCTTGTATCACTCGAGCGAGAAACGTTTCAGTTGCTCATG
AACGGTTACAGGTGAAACCTATTCATA
UFO01622.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp19d-RB | 624 | CG1668-RB | 44..498 | 4..458 | 2260 | 99.8 | Plus |
| Obp19d-RA | 1101 | CG1668-RA | 521..975 | 4..458 | 2260 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20420133..20420285 | 4..156 | 750 | 99.3 | Plus |
| X | 23542271 | X | 20420577..20420713 | 246..382 | 685 | 100 | Plus |
| X | 23542271 | X | 20420415..20420504 | 156..245 | 450 | 100 | Plus |
| X | 23542271 | X | 20420778..20420853 | 383..458 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:32:05 has no hits.
UFO01622.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:13 Download gff for
UFO01622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp19d-RA | 517..975 | 1..458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:47:06 Download gff for
UFO01622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbprp2-RA | 517..975 | 1..458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:45 Download gff for
UFO01622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp19d-RA | 517..975 | 1..458 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:45 Download gff for
UFO01622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20420129..20420285 | 1..156 | 98 | -> | Plus |
| X | 20420416..20420504 | 157..245 | 100 | -> | Plus |
| X | 20420577..20420713 | 246..382 | 100 | -> | Plus |
| X | 20420778..20420853 | 383..458 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:13 Download gff for
UFO01622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20291156..20291312 | 1..156 | 98 | -> | Plus |
| arm_X | 20291443..20291531 | 157..245 | 100 | -> | Plus |
| arm_X | 20291604..20291740 | 246..382 | 100 | -> | Plus |
| arm_X | 20291805..20291880 | 383..458 | 100 | == | Plus |
