UFO01623.5prime Sequence
1122 bp (983 high quality bases) assembled on 2008-10-17
> UFO01623.5prime
CAGTCGACATGGTGGCCACCGGTGGACAGGCTCAGGATCAGGGCCAGAAC
CAGGAGCCGGATGTGCTAAACCCCACGTCGGCGGTGACGGGGTTGCCACA
AAAGCGCTACTACCGCCAGCGTGCGCACTCGAATCCCATTGCGGACCACA
GCTTCGACTATCCTGCTCGCCCGGAAGATGTGGACTGGCGCTCCATGTAC
CCAGGCATTCAGCAGGGCCAGCAGGTAAGTTTTGCGGACATAGGCTGCGG
CTATGGCGGCTTTCTCGTCACCCTGGGGGAGATGTTCCCCGAGAAGCTGT
CCATCGGCATGGAAATCCGCGTCAAGGTGTCGGACTACGTGGTGGACCGG
ATTGCGGCACTGCGTCGACGATGCGCGGATACGGGTGCATACCAGAACAT
TGCCTGCTTACGCACCAACGCCATGAAGTATCTGCCCAACTACTTCGTAA
AGGGCCAGCTGGAGAAGATGTTCTTCCTCTACCCGGACCCACATTTCAAG
CGCGCCAAGCACAAGTGGCGTATTATCAACCAGGCTCTACTCTCCGAATA
TGCCTATATCCTCAGGAAGGGGGGTCTGTTGTACACCATGACGGACGTTG
AGGACTTGCACAAGTGGATAGTGACACATATGGAGGAGCATCCGCTGTAC
GAGCGTCTTACCGAAGAGGAGGCCAATGCTGATCCCATCACCCCGAAGCT
GTACCAAAGCAGCGAGGAGGGCGCTAAGGTGGTTCGAAACAAGGGCGATC
ATTTTCTGGCCATTTTCCGGCGCCTTGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCA
TAATCACAACTAGCCTAGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATCAACAGAGTCAGCGAGCCTCGA
TTATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTC
ATTTAAGCATCTGCGACTGGAAGCCAATCACAAACGCGCAGTGATTGACC
TGAATTGCCACGGCATCAGACC
UFO01623.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4045-RA | 923 | CG4045-RA | 81..848 | 9..776 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2075206..2075618 | 573..161 | 2065 | 100 | Minus |
| X | 23542271 | X | 2075669..2075820 | 160..9 | 760 | 100 | Minus |
| X | 23542271 | X | 2075038..2075140 | 674..572 | 515 | 100 | Minus |
| X | 23542271 | X | 2074870..2074971 | 776..675 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:16:55 has no hits.
UFO01623.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:31 Download gff for
UFO01623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4045-RA | 75..848 | 1..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:47:17 Download gff for
UFO01623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4045-RA | 39..812 | 1..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:12 Download gff for
UFO01623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4045-RA | 75..848 | 1..776 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:12 Download gff for
UFO01623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2074870..2074971 | 675..776 | 100 | <- | Minus |
| X | 2075038..2075139 | 573..674 | 100 | <- | Minus |
| X | 2075207..2075618 | 161..572 | 100 | <- | Minus |
| X | 2075669..2075824 | 1..160 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:31 Download gff for
UFO01623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1968903..1969004 | 675..776 | 100 | <- | Minus |
| arm_X | 1969071..1969172 | 573..674 | 100 | <- | Minus |
| arm_X | 1969240..1969651 | 161..572 | 100 | <- | Minus |
| arm_X | 1969702..1969857 | 1..160 | 97 | | Minus |
