UFO01624.5prime Sequence
1103 bp (995 high quality bases) assembled on 2008-10-17
> UFO01624.5prime
CAGTCGACATGTCGCTAACTATGCGAATTTTCACCGCATCGCGCAACGGA
CAGCGCCTGTTTGGCAGCCATGGAGCCCGGCTGCTGGCCGCCCAGCGAGC
AGAACCCAAAGATATCGTCGAGGTTCCCAAGGGCTATGTGTATGTAAACA
ACAAGGAACTGAGCATGGAGTTTGCCGACATCACGGACCGTGCTGCATCC
ACCATGTTCTTCGGTGAACTCTTACGTGGATTTGCCGTCACCCTGGCGCA
CATCTTCAAGGAACCGGCCACTATCAACTATCCCTTTGAAAAGGGACCAC
TGAGCCCGCGATTCCGCGGAGAACATGCCCTTCGTCGTTATCCCAGTGGA
GAGGAGCGCTGCATCGCTTGCAAGCTATGCGAGGCTATTTGCCCCGCACA
GGCGATCACCATCGAAGCGGAGGAGCGCGCGGATGGCAGCAGACGTACCA
CACGCTACGATATCGACATGACCAAGTGCATCTACTGCGGATTCTGTCAG
GAAGCCTGTCCCGTGGACGCCATCGTCGAGGGACCCAACTTCGAGTTCTC
CACGGAGACGCACGAGGAGCTGCTGTACAACAAGGAGAAGCTTCTCTGCA
ACGGCGACAAGTGGGAGTCCGAGATTGCCTCTAACTTGCAGGCCGACCAT
CTCTATCGTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCACTCATCGCAGTACTGTGTAATTCATTAAGCATTCTGCCGA
CATGAAGCCATCACAAACGGCATGATGAACCTGATCGCCAGCGCATCGCA
CTTGTCGCTTGGCGTATAAATATTTGCCATGTGAACGGGGGCGAGAAGTT
GTCCAATGCCACGTATCAACTGGGTGAAACTCACCAGAATGGCTGAGACG
AAA
UFO01624.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ND23-RA | 819 | CG3944-RA | 89..739 | 9..659 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15836354..15836807 | 501..48 | 2270 | 100 | Minus |
| 3R | 32079331 | 3R | 15836128..15836288 | 659..499 | 805 | 100 | Minus |
| 3R | 32079331 | 3R | 15836989..15837029 | 49..9 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:17:07 has no hits.
UFO01624.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:35 Download gff for
UFO01624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND23-RA | 89..749 | 9..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:47:20 Download gff for
UFO01624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND23-RA | 69..729 | 9..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:20 Download gff for
UFO01624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND23-RA | 89..749 | 9..670 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:20 Download gff for
UFO01624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15836118..15836286 | 501..670 | 97 | <- | Minus |
| 3R | 15836355..15836806 | 49..500 | 100 | <- | Minus |
| 3R | 15836990..15837029 | 9..48 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:35 Download gff for
UFO01624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11661840..11662008 | 501..670 | 97 | <- | Minus |
| arm_3R | 11662077..11662528 | 49..500 | 100 | <- | Minus |
| arm_3R | 11662712..11662751 | 9..48 | 100 | | Minus |
