UFO01627.5prime Sequence
1094 bp (993 high quality bases) assembled on 2008-10-17
> UFO01627.5prime
CAGTCGACATGAGTTCTCTAAAGCTCCAGAAGAGGCTCGCAGCCTCCGTG
CTGCGATGCGGCAAGAAGAAGGTCTGGTTGGATCCCAATGAAATCAACGA
GATCGCTAACACAAACTCGCGTCAGAACATTCGCAAGCTTATCAAGGATG
GTCTGATCATCAAGAAGCCCGTCGTGGTCCACTCCCGTTACCGTGTGCGC
AAAAACACCGAGGCCCGCCGCAAGGGACGTCACTGCGGATTCGGAAAGCG
TAAGGGTACTGCGAACGCCCGCATGCCTACCAAGCTGCTGTGGATGCAGC
GCCAGCGCGTTCTGCGCCGCCTGTTGAAGAAGTACCGCGACAGCAAGAAG
ATTGACAGGCACCTGTACCACGACCTGTACATGAAGTGCAAGGGTAACGT
ATTCAAGAACAAGCGCGTCCTCATGGAGTACATCCACAAGAAGAAGGCTG
AGAAGCAGCGCAGCAAGATGCTGGCTGATCAGGCCGAGGCTCGCCGACAG
AAGGTGCGTGAGGCCCGCAAGCGCCGCGAGGAGCGTATTGCCACCAAGAA
GCAGGAGCTCATCGCCCTGCATGCTAAGGAGGACGAGATCGCTGCCAAGG
CCGCCACCGCGGGTCACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAA
AAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT
GAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAA
ATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGC
ATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACTGAATCGCA
GCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGTGAAAC
GGGGCGAAAAGTTGTCCTATTTGTCCACGTTTAATCAAACTGGTGAACTC
ACTCAGGATTGCCTGAACAGAAAAAAATTCTCCATAACCTTTAG
UFO01627.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL19-RB | 755 | CG2746-RB | 36..645 | 8..617 | 3050 | 100 | Plus |
| RpL19-RA | 1361 | CG2746-RA | 74..683 | 8..617 | 3050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24968555..24969051 | 617..121 | 2485 | 100 | Minus |
| 2R | 25286936 | 2R | 24969116..24969226 | 122..12 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:25:50 has no hits.
UFO01627.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:21 Download gff for
UFO01627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-RA | 68..692 | 1..627 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:47:42 Download gff for
UFO01627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-RB | 26..650 | 1..627 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:16 Download gff for
UFO01627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-RA | 68..692 | 1..627 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:16 Download gff for
UFO01627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24968546..24969051 | 121..627 | 99 | <- | Minus |
| 2R | 24969118..24969226 | 12..120 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:21 Download gff for
UFO01627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20856069..20856574 | 121..627 | 99 | <- | Minus |
| arm_2R | 20856641..20856749 | 12..120 | 100 | | Minus |
