UFO01628.5prime Sequence
956 bp (861 high quality bases) assembled on 2008-10-17
> UFO01628.5prime
CAGTCGACATGGGCAAGAAAATCGACAACCCTGAGAGCTCGGCAAAGGTT
TCCGATGCCGAAGAGGAGGAGGAGGAGTACGCCGTGGAAAAGATCATCGA
CAGGCGGGTGCGCAAGGGAAAGGTGGAGTACTATCTGAAATGGAAGGGCT
ATCCCGAAACTGAGAACACGTGGGAGCCGGAGAACAATCTCGACTGCCAG
GATCTTATCCAGCAGTACGAGGCGAGCCGCAAGGATGAGGAGAAGTCAGC
CGCCTCCAAGAAGGATCGACCCAGCAGCAGCGCCAAGGCCAAGGAAACTC
AAGGACGCGCCAGCAGTTCGACGTCCACAGCAAGCAAGCGAAAGTCCGAA
GAACCAACAGCGCCCTCTGGCAATAAATCAAAACGTACCACAGATGCGGA
GCAGGACACCATTCCCGTTTCAGGATCTACCGGATTCGATCGCGGCCTGG
AGGCCGAAAAGATCTTGGGTGCCTCCGACAATAATGGCCGCCTGACATTC
CTCATTCAGTTCAAAGGCGTGGACCAAGCAGAAATGGTGCCCTCCTCAGT
GGCCAATGAAAAAATCCCACGAATGGTAATCCACTTCTACGAAGAGCGCC
TATCCTGGTACTCTGATAATGAAGATGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCA
TAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACAATAAAAACGCCCGGCGGCAACCGAGCGTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCATCACAGGAGTCAGCGAGCTCGATATC
AAATACGCCCCGCCTGCCACTCATCGCAGTATTGTTGATCATAGCATCTG
CGACTGAGCCATACAACGCATTATGACTGATCGCACGGCACCAGCACCTT
GGGCCT
UFO01628.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(var)205-RB | 1109 | CG8409-RB | 280..897 | 9..626 | 3090 | 100 | Plus |
| Su(var)205-RA | 992 | CG8409-RA | 163..780 | 9..626 | 3090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8209838..8210105 | 626..359 | 1340 | 100 | Minus |
| 2L | 23513712 | 2L | 8210353..8210475 | 360..238 | 615 | 100 | Minus |
| 2L | 23513712 | 2L | 8210549..8210668 | 240..121 | 600 | 100 | Minus |
| 2L | 23513712 | 2L | 8210727..8210843 | 125..9 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:13:58 has no hits.
UFO01628.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:48 Download gff for
UFO01628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)205-RA | 163..783 | 9..630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:47:43 Download gff for
UFO01628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)205-RB | 78..698 | 9..630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:47 Download gff for
UFO01628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)205-RA | 163..783 | 9..630 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:47 Download gff for
UFO01628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8210353..8210473 | 240..360 | 100 | <- | Minus |
| 2L | 8210550..8210666 | 123..239 | 100 | <- | Minus |
| 2L | 8210730..8210843 | 9..122 | 100 | | Minus |
| 2L | 8209834..8210103 | 361..630 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:48 Download gff for
UFO01628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8210730..8210843 | 9..122 | 100 | | Minus |
| arm_2L | 8209834..8210103 | 361..630 | 99 | <- | Minus |
| arm_2L | 8210353..8210473 | 240..360 | 100 | <- | Minus |
| arm_2L | 8210550..8210666 | 123..239 | 100 | <- | Minus |
