UFO01629.5prime Sequence
1077 bp (985 high quality bases) assembled on 2008-10-17
> UFO01629.5prime
CAGTCGACATGTATAAGTTGCTGGGTAGCCTGAAGAGCTACCTCAAGTGG
CAGGACATCCAGACGGACAACGCCGTCTTCCGGCTGCACAACTCCTTTAC
CACGGTGCTCCTGCTAACCTGCAGCCTGATCATCACCGCCACCCAGTACG
TGGGCCAGCCGATTAGCTGCATCGTCAATGGCGTACCGCCGCACGTGGTC
AACACGTTCTGCTGGATCCACAGCACTTTCACCATGCCGGACGCTTTTCG
CAGACAGGTTGGCCGAGAGGTGGCTCATCCCGGTGTGGCCAATGATTTTG
GCGACGAGGATGCCAAGAAGTACTACACCTACTACCAGTGGGTGTGCTTC
GTGCTTTTCTTCCAGGCCATGGCCTGTTATACGCCCAAATTCCTGTGGAA
TAAATTCGAGGGCGGACTGATGCGCATGATTGTGATGGGTCTGAATATCA
CGATCTGCACCCGCGAGGAGAAGGAGGCCAAACGCGATGCCCTGCTGGAC
TATCTGATCAAGCACGTGAAGCGCCACAAGCTGTACGCCATTCGGTACTG
GGCCTGCGAATTTCTCTGCTGCATCAACATTATCGTGCAGATGTATCTGA
TGAATCGCTTTTTCGATGGCGAGTTCCTCTCGTACGGTACGAATATCATG
AAGCTTTCGGATGTGCCGCAGGAGCAAAGGGTGGATCCCATGGTCTATGT
GTTCCCCCGGGTGACCAAGTGCACCTTCCACAAGTATGGTCCCTCTGGTT
CGCTGCAGAAGCACGACTCACTCTGCATCCTGCCGCTGAACATTGTGAAC
GAGAAGACGTACGTGTTCATCTGGTTCTGGTTCTGGATCCTGCTCGTCCT
GCTCATCGGACTGATAGTGTTCCGTGCTGCATTATCTTTATGCCGAAATT
CCGACCCCGCCTCCTGAACGCCAGCAATCGCATGATTCCGATGGAGATCT
GTCGCTCGCTGTCCCGCAACTGGACAACCGTGACTGGTGGCTAATCTATT
ATGCTGGGTCGCCAATCTTGATCCGTCTATCCAAAAAGAACGTGGATGAG
CGAGTGCAGACAAGTGGGAGCCCTCCA
UFO01629.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ogre-RF | 3068 | CG3039-RF | 1584..2628 | 9..1055 | 4975 | 98.8 | Plus |
| ogre-RE | 1689 | CG3039-RE | 205..1249 | 9..1055 | 4975 | 98.8 | Plus |
| ogre-RD | 2794 | CG3039-RD | 1310..2354 | 9..1055 | 4975 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6974731..6975085 | 874..520 | 1775 | 100 | Minus |
| X | 23542271 | X | 6977157..6977407 | 259..9 | 1255 | 100 | Minus |
| X | 23542271 | X | 6975151..6975308 | 521..364 | 790 | 100 | Minus |
| X | 23542271 | X | 6974502..6974650 | 1025..876 | 575 | 96.7 | Minus |
| X | 23542271 | X | 6976022..6976133 | 366..255 | 560 | 100 | Minus |
| X | 23542271 | X | 6999830..6999953 | 710..833 | 215 | 78.2 | Plus |
| X | 23542271 | X | 6999437..6999490 | 317..370 | 195 | 90.7 | Plus |
| 3R | 32079331 | 3R | 28854962..28855064 | 807..705 | 185 | 78.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:32:19 has no hits.
UFO01629.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:17 Download gff for
UFO01629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ogre-RD | 1310..2340 | 9..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:47:45 Download gff for
UFO01629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ogre-RB | 318..1348 | 9..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:53 Download gff for
UFO01629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ogre-RD | 1310..2340 | 9..1039 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:53 Download gff for
UFO01629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6974488..6974652 | 875..1039 | 93 | <- | Minus |
| X | 6974731..6975083 | 522..874 | 100 | <- | Minus |
| X | 6975151..6975306 | 366..521 | 100 | <- | Minus |
| X | 6976023..6976130 | 258..365 | 100 | <- | Minus |
| X | 6977159..6977407 | 9..257 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:17 Download gff for
UFO01629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6869184..6869339 | 366..521 | 100 | <- | Minus |
| arm_X | 6868521..6868685 | 875..1039 | 93 | <- | Minus |
| arm_X | 6868764..6869116 | 522..874 | 100 | <- | Minus |
| arm_X | 6870056..6870163 | 258..365 | 100 | <- | Minus |
| arm_X | 6871192..6871440 | 9..257 | 100 | | Minus |
