UFO01631.5prime Sequence
1109 bp (994 high quality bases) assembled on 2008-10-17
> UFO01631.5prime
CAGTCGACATGGAGGCATCTGCTGCCAAAATCACGCCTATGGCCAGTTCC
ATGTCCGCTTCCGGATCCACAAACTCCCCCTCCAGTGAAAAAATGAACTA
CGCACTGCAAGTGGCGCTGCAGACGATCAAGGAGCGGTGCATCCAGCTGC
AGCGCCGCGTGGCCAGCATGGAGGAGGAGAACCAGCAGCTAAGGGAGGCC
TCCAGCAGGTCGGAAGGTGCTCCAAGGGCAAACGAAATCGGGGTCACTGG
GGACGTCCTCTCTCTGAAAGCACAGGTCTCTGAGCTGCAGCGCCAAAAGG
AGCAGCTGGAGGAGCACATTGGCATGGTATCCAACGAGAACAGACGGCTC
TGGTCCCGCCTATCGCAGATCTCCAAGGATCAGCAGCTGAACGCACTGCC
CAGCTCAACAGACTCGCGAGCCCAGCAAAACCAGAACCTGGTGCGCTCCA
AGACCTTTACGCAGCACTCCCCCAATCCTCACCTTCGCCAAAAGATGCTC
TCCGACGGCATTAAGGATCTCAGTCTGGAGGAAATAGCCCTGGATGACTT
CGGTGCCAGCAGTGAGGAACTAGGTTACCCCTACAACCTGCAAAAGGTGG
AGGAAACCACTAGTGAACCAGATGCCAATGTGGATGCCAAAAGATGTTTG
GATGGACTGCAGGAGCTGAGGCGAGAGGCCATGAAGCAGCAGCAGGAGCT
CAGATCGGTAATGACTCTGCTAGAAAATCGCATAGCACTCAAGCCCTGTC
CGGAATGTGCCCAGAAAACCATCAAAAAACCGGAGATGGCCGACAAAAGT
CTGGAAACGGACGACAGCCTGACCAGCGAGCTGAAGAACTATGAGAGCCA
ACACAATGGACACAATGGCACGCCGCCCAGCCAGAGAATTAACATAATAC
AAGAGAAAATCAAAGCAGATGCAGCCGACGCAATGGAGAAGACCTGCCCT
ATGTGCGGCAAGCAGTACTCCAGCCAAGTGTTCTTCAATGCGTTCCGCGG
AGCACGTCGAGATGCCCTTCATCCGACGATGCACTGTACTGAGTCGGAGA
ACAGCATGAGCGCCCAGTTTGATCGTTCCCATGCTGTGGGGTGACTTCCC
CAGCTTCTA
UFO01631.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spn-F-RB | 1465 | CG12114-RB | 117..1208 | 9..1098 | 5195 | 98.8 | Plus |
| spn-F-RA | 1465 | CG12114-RA | 117..1208 | 9..1098 | 5195 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31255243..31255969 | 9..735 | 3635 | 100 | Plus |
| 3R | 32079331 | 3R | 31256036..31256359 | 734..1057 | 1390 | 97.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:11:02 has no hits.
UFO01631.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:59 Download gff for
UFO01631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spn-F-RA | 110..1216 | 1..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:47:47 Download gff for
UFO01631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spn-F-RA | 95..1201 | 1..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:20 Download gff for
UFO01631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spn-F-RA | 110..1216 | 1..1103 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:20 Download gff for
UFO01631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31255236..31255969 | 1..735 | 99 | -> | Plus |
| 3R | 31256038..31256410 | 736..1103 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:59 Download gff for
UFO01631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27080958..27081691 | 1..735 | 99 | -> | Plus |
| arm_3R | 27081760..27082132 | 736..1103 | 95 | | Plus |
