UFO01632.5prime Sequence
1110 bp (1019 high quality bases) assembled on 2008-10-17
> UFO01632.5prime
CAGTCGACATGGGCGACGTGATGAATATCGACAGCATAATATCGCGACTT
CTCGAGGTGCGTGGGGCACGGCCAGGTAAAAACGTACAGCTCTCGGAGGG
CGAGATCCGGGGACTTTGCTTGAAGTCGCGCGAGATCTTCCTGTCGCAGC
CCATTCTGCTCGAGCTAGAGGCACCGTTGAAGATCTGCGGCGACATCCAT
GGACAGTACTACGATCTGTTGCGTCTGTTCGAGTACGGCGGCTTTCCGCC
GGAATCGAATTACCTGTTCCTCGGCGACTACGTCGATCGCGGCAAGCAAT
CGCTGGAGACGATCTGCCTGCTGCTCGCCTACAAGATCAAATACTCGGAG
AATTTCTTCCTGCTGCGCGGCAACCACGAATGCGCCAGCATTAATCGCAT
ATACGGATTCTACGACGAATGCAAGCGTCGCTACAGCATCAAGTTGTGGA
AGACATTCACGGACTGCTTCAACTGCCTGCCAGTGGCGGCCATTGTCGAC
GAGAAGATCTTCTGCTGCCACGGTGGTCTCAGTCCCGATTTGACCTCCAT
GGAGCAGATCCGTCGCATTATGCGGCCAACCGATGTGCCCGACCAGGGAC
TGCTGTGCGATCTCCTGTGGTCCGATCCCGATAAGGATACCATGGGCTGG
GGCGAAAACGACCGCGGCGTTAGCTTCACCTTCGGTGCCGAGGTGGTGGC
CAAGTTTTTGCAGAAGCACGAGTTCGATCTCATCTGCCGAGCCCATCAAG
TCGTCGAGGATGGGTACGAGTTCTTTGCCAAACGCATGCTGGTCACCCTG
TTCTCGGCGCCCAACTACTGCGGCGAGTTCGACAATGCCGGCGCCATGAT
GTCCGTGGACGATACGCTGATGTGCTCGTTCCAAATCCTCAAGCCAGCCG
ACAGCGTAAAAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCCGCGGGCC
CAGGTAAGTGTCATAATCATATCATAATCATATCATATCACCACTAGCTA
GGAGATTCTGGTCATGACTAGTGCTTGGATTCCCACAATAAAAACCCCCG
CGGCACCGGGCGTCGACAATCCGATGATTCTGGAGTTATTTCTGAATCAT
CCACGGATTC
UFO01632.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pp1-87B-RA | 2203 | CG5650-RA | 228..1135 | 7..913 | 4515 | 99.9 | Plus |
| Pp1alpha-96A-RB | 3210 | CG6593-RB | 402..1284 | 21..903 | 2390 | 84.8 | Plus |
| Pp1alpha-96A-RA | 2221 | CG6593-RA | 402..1284 | 21..903 | 2390 | 84.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12424783..12425690 | 913..7 | 4490 | 99.9 | Minus |
| X | 23542271 | X | 15359451..15360313 | 895..33 | 2215 | 83.8 | Minus |
| 3R | 32079331 | 3R | 24518843..24519192 | 57..406 | 1000 | 85.7 | Plus |
| 3R | 32079331 | 3R | 24519597..24519885 | 408..696 | 890 | 87.2 | Plus |
| X | 23542271 | X | 10406418..10406701 | 123..406 | 775 | 84.9 | Plus |
| X | 23542271 | X | 10406764..10407104 | 408..748 | 595 | 78.3 | Plus |
| Y | 3667352 | Y | 3539716..3540455 | 881..142 | 490 | 71.1 | Minus |
| X | 23542271 | X | 10407172..10407299 | 756..883 | 340 | 84.4 | Plus |
| 3R | 32079331 | 3R | 24519938..24520082 | 691..835 | 320 | 81.4 | Plus |
| X | 23542271 | X | 16567440..16567565 | 293..168 | 195 | 77 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:59:15 has no hits.
UFO01632.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:08 Download gff for
UFO01632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1-87B-RA | 221..1138 | 1..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:47:58 Download gff for
UFO01632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1-87B-RA | 221..1138 | 1..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:03 Download gff for
UFO01632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1-87B-RA | 221..1138 | 1..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:03 Download gff for
UFO01632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12424794..12425693 | 1..903 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:08 Download gff for
UFO01632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8250516..8251415 | 1..903 | 99 | | Minus |
