UFO01633.5prime Sequence
1073 bp (977 high quality bases) assembled on 2008-10-17
> UFO01633.5prime
CAGTCGACATGTGCGGCGGTTTCACCTGCTCGAAAAACGCGCTAATTGCG
CTCAACATTTTGTATGTGATGATTGGATTCCTGCTGATTGGAGTGGGCGT
GTACGCGCGTGCCGCCTCCATAGTGACCAACCTGCCGATTGTGGGCGGGA
TCCTGGCCTGCGGTGTCATCCTCATATGCATATCCATGCTGGGACTCGCC
GGAGCCGTCAAGCACCACCAAGTGATGCTCTTCTTCTACATGATCATTCT
GTTCATGCTGTTCCTGATCCAGTTCTCCATCGCCAGTTCCTGCTTGGCCG
TCAACTCCGAACAGCAGCAGCAGTTCGCCGAGCAAGGATGGATGACGGTG
CCCACGGATTTGCGCAAACAAGTGCAGGATAGTCTGAAATGCTGCGGATT
CAATGCCACCGCACCGAGCACAACTTCCGTGGTTCCCCCGTCCAATGAGC
CCTCGTGCGAGCTGATCAATCAACAGTGCTGTGCCCACTCGTCCGAGCCG
GACTGCCGTTGCGAACCATGTGGACCCCTACTGGAGGACAAGATCGACTA
TGCCTTCAAGTTGTGCGGCGGTCTGGGCATCTTCTTCAGCTTCACTGAGG
TCCTGGCTGTTTTCCTGGCGCGTCGCTACCGCAACCAACATGATCCTTGC
TATCTGCCCGCACGCGCCGTCTTTCCGCACGATTATTTATATGCAAGCTT
TCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATA
ATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGA
CTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGT
TCTGAACAAATCCAGATGGAGTTCTGAGTCATTACTGGATCTATCAACAG
GAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCTGCCCCTCATCGC
AGTACTGTGTATCATAGCATTCTGCGACATGAGCATCACAAACGCATGAT
GACTGATCGCCAGCGCATCAGCACCTTGTCGCTGCTATATATATTGGCCC
ATGTGAACGGGGCGAGATGTCCA
UFO01633.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp97E-RE | 1757 | CG6323-RE | 115..799 | 8..692 | 3425 | 100 | Plus |
| Tsp97E-RH | 2094 | CG6323-RH | 115..799 | 8..692 | 3425 | 100 | Plus |
| Tsp97E-RA | 1433 | CG6323-RA | 115..799 | 8..692 | 3425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26963156..26963520 | 601..237 | 1825 | 100 | Minus |
| 3R | 32079331 | 3R | 26964118..26964286 | 236..68 | 845 | 100 | Minus |
| 3R | 32079331 | 3R | 26962359..26962453 | 692..598 | 475 | 100 | Minus |
| 3R | 32079331 | 3R | 26964643..26964703 | 68..8 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:14:26 has no hits.
UFO01633.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:56 Download gff for
UFO01633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp97E-RA | 108..803 | 1..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:47:59 Download gff for
UFO01633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp97E-RA | 116..811 | 1..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:02 Download gff for
UFO01633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp97E-RA | 108..803 | 1..696 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:02 Download gff for
UFO01633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26962355..26962451 | 600..696 | 97 | <- | Minus |
| 3R | 26963158..26963520 | 237..599 | 100 | <- | Minus |
| 3R | 26964118..26964285 | 69..236 | 100 | <- | Minus |
| 3R | 26964643..26964710 | 1..68 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:56 Download gff for
UFO01633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22788880..22789242 | 237..599 | 100 | <- | Minus |
| arm_3R | 22788077..22788173 | 600..696 | 97 | <- | Minus |
| arm_3R | 22789840..22790007 | 69..236 | 100 | <- | Minus |
| arm_3R | 22790365..22790432 | 1..68 | 94 | | Minus |
