UFO01634.5prime Sequence
1031 bp (929 high quality bases) assembled on 2008-10-17
> UFO01634.5prime
CAGTCGACATGGCCGACAATAATTCAGCATCAGAGAGCGAAAATATAATT
CCTGTCTTTCTAAGTAATTTCGATGAAAAGGAGCAGGTGCGTCAACTCAG
CTTATACCTTCACAACCTGCAAGACCGTTTGCGGCAGGGCATTCAGGAGC
ACCAGAAGGTAATGCAGTCGTCGGTGCAGTTGCTCAAGGAGGTGGGCGAT
GTGAACGACATGATGCAGCTCGCGAGGTGTGGCCACCGCGCCGGGGCCTC
CAAGATACAGCGACTGATCGTGGGTTTCGAGACGGTTAATGCTGTGAACG
CCCCGCAAACCTCCGCCGTGGCGGGCATGAGTTTGCCTTCTGACCTCACC
GAGATTCAAGGTCTATTGGTGGAATTTGAGCACCTCAATGAAAGCCAAGT
TCTGCGGGAGAGCCAGGAGAACTTCAAACGTGCCCGAGACTCACTGGAGA
AGGTTCTCGGCTTTCTAGAGAAGATTGGCAGCGAATCTTCACGGCCGTCT
CCACAAGGAAGTCAGCTCTTTGGGTGTCCCAGTGCCAGCCGCAGCCTGCG
CGAGAAGATCGAAGCATTCAACAAGGTCTTAGAGGCGGCCCCCGAGAAAC
TTGGGGATACCTGCCGTCATTTTAAGGAGTGCTTTTGTAGCTGCTGCACC
TTGGACGAGTCCTTCCTGTCTAAAGGGCACAATCCCCTTCCCGTTGCCTC
GAAAACAAATTCGGGCTACGAGGGGGACATAGACAGCGAGGTAGAGCAGC
CGGAGCGGTCCAATAACGAATCGGGGGCGGATATAAGGCCGATCGGGCAA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGTCATAATC
ATAATCATAATCATAATCATATCACACTAGCCTAGAGATCCTGGTCATGA
CTAGTGCTGATTCTCCACCATAAAAACGCCCGCGCACGAGCGTCTGAACA
ATCAGATGGAGTTCTGAGTCATACTGATCTATCAACAGGAGTCAAGCGGC
TCGAATTCAATACGCCCGCCCTGCCACTCAT
UFO01634.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1971-RA | 1145 | CG1971-RA | 127..915 | 9..796 | 3920 | 99.9 | Plus |
| CG1971-RB | 1106 | CG1971-RB | 103..846 | 54..796 | 3695 | 99.9 | Plus |
| CG1971-RC | 1034 | CG1971-RC | 54..774 | 77..796 | 3580 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31805766..31806500 | 54..788 | 3675 | 100 | Plus |
| 3R | 32079331 | 3R | 31805594..31805639 | 9..54 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:55:13 has no hits.
UFO01634.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:50 Download gff for
UFO01634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1971-RA | 127..918 | 9..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:47:40 Download gff for
UFO01634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1971-RA | 127..918 | 9..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:05 Download gff for
UFO01634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1971-RA | 127..918 | 9..800 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:05 Download gff for
UFO01634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31805594..31805639 | 9..54 | 100 | -> | Plus |
| 3R | 31805767..31806512 | 55..800 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:50 Download gff for
UFO01634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27631316..27631361 | 9..54 | 100 | -> | Plus |
| arm_3R | 27631489..27632234 | 55..800 | 99 | | Plus |
