UFO01638.5prime Sequence
1083 bp (980 high quality bases) assembled on 2008-10-17
> UFO01638.5prime
CAGTCGACATGGCAACCGGCGTCATCCAGAGTAGCGTTGTCTCCACCTCC
GCCGGACGCCAGAATATCTGCGACTGCCTGGAACAGGAGTCCGCCGGATT
GGTCAAGGCCCTGCCCAAATCCAAGTCGGCCGATCAGCTCTCGGAACTCA
CCTGCGCCTGCCTGCGCTGCCAGTACCTGGCCACGGATCTTCAGCATCCG
AACACCCAGTCCGGTCACCTGCCCGTGGAGCACAGACACCGACCCGTGAG
CTCAGGCTCCGGTTCACTGGGCGCCCTCAGCGCCAAGGAGTCGCCCATCT
TCGTGCGCCGCCAGATCTGTTTCCCGTCCGCGGAGACCCAGCTGCATCCG
CCGCTCAGCTCCTCCCAGTTCTCGCTGCGAAGTGCTTCTCCGGCCTACGC
CGAGCCCAAGCCGGAGTTGGATCTCGGCGCCATAGAGGCGCTGCAACTGA
CCACGGTCATGCCCGCGGGAGTCAACCGTAACCACATGGACATCAACAGG
AACAACGGATACCTGCACAACGGAGCCATCATGACATCCACCAGCGATAA
GCGCGAGCATCTGTACAAGATTCTAGTCATTGGTGAACTGGGCACCGGCA
AGACGTCCTTCATTAAGCGCTATGTGCACCAGTTCTTCAGCCAGAACTAC
AGGGCCACCATCGGCGTGGACTTCGCCCTGAAAGTGCTGCAGTGGGACGC
CAATACGATAGTGCGCCTCCAGCTGTGGGATATCGCCGGTCAGAGAGGTT
TGGCAACATGACCCGTGTCTACTACAAGGAGGCGGTGGGCGCGTTCATCG
TTTTTGATGTGACTCGCAGTGGGACTTTCGATTGCGTGAGCAAGTGGAAG
GAAGATCTAGACTCCAAGTGCAGCTGCCGGACGGCAGTCCCATTCCGTGC
ATCCTGCTGGCCAATAATGCGACCAGGAAAAGCAGGCATCATAACGCAGC
CCGAGAAGATGGATGAGTATGTGAGGGGAGACGATTGCCGGTTGGTTTGA
GAATTCCGGCAGGAGAATATTCAACATCGATGGAGGCAGCTCGGCCTCGT
GAATAGATCTCATCACGAATAGCTGTATTCTGC
UFO01638.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ltd-RC | 2347 | CG8024-RC | 610..1676 | 8..1065 | 4930 | 98.3 | Plus |
| ltd-RE | 2156 | CG8024-RE | 419..1485 | 8..1065 | 4930 | 98.3 | Plus |
| ltd-RD | 1448 | CG8024-RD | 227..777 | 524..1065 | 2350 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9185216..9185733 | 525..8 | 2590 | 100 | Minus |
| 2R | 25286936 | 2R | 9178831..9179225 | 917..525 | 1875 | 99.5 | Minus |
| 2R | 25286936 | 2R | 9178622..9178749 | 1043..918 | 280 | 90 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:28:39 has no hits.
UFO01638.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:20 Download gff for
UFO01638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RE | 413..1496 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:48:04 Download gff for
UFO01638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RC | 623..1706 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:48 Download gff for
UFO01638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RE | 413..1496 | 1..1075 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:48 Download gff for
UFO01638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9178830..9179225 | 525..917 | 99 | <- | Minus |
| 2R | 9185217..9185737 | 1..524 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:20 Download gff for
UFO01638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5066335..5066730 | 525..917 | 99 | <- | Minus |
| arm_2R | 5072722..5073242 | 1..524 | 99 | | Minus |
