UFO01639.5prime Sequence
1091 bp (989 high quality bases) assembled on 2008-10-17
> UFO01639.5prime
CAGTCGACATGTCATCATTGGACGCAGACACCGTGCTGCTGAGCATTTTG
TTCCTCGTAGTCATCGAGAATGCGCTAGAGATCTATATATCGCTGCGCCA
GGTGAAAGTGTACCAAACTGCACTGAAGGTACCGGCCGAACTGAAGTCAC
ACATGGGCGAGGATACGTTCCATAAGGCGCGGAAATATGGTCTGGACCAG
GAGAAATTCGGCATCTTCAAAGCTGTTGTTATGGATGTGGCCCTGCTTTG
CATGGAGCTGTACATCGGACTGATCGCTGTGCTCTGGCAGCTGTCCGTCC
AGGTGGTGGATAAACTGCAATGGGACTCCAAAAACGAGATCATCGTCAGC
TGCGTTTTTGTGCTCATATCGAATGTATTGAGCACTTTCAAGGGACTGCC
CTTCAAGATCTACAAGATATTCGTGCTGGAGGAGACGCATGGCTTTAACA
AACAAACAGCGAGATTCTTCGCCTGGGATCAGCTCAAAGGCTTCCTAGTC
ACCCAGGTCCTCATGATTCCCATCACAGCGGCTATTATCTTCATCGTGCA
ACGCGGCGGCGACAACTTTTTCATATGGCTGTGGATCTTCACAGGCGTTA
TCTCGCTGGTTCTACTCACTTTGTATCCGATTTTCATTGCTCCCCTGTTC
GACAAGTATACTCCGCTGGAGAAGGGTGCTCTGAGGCAATCGATTGAGGA
TCTGGCCGCATCGCTCAAGTTCCCGCTCACTAAGCTTTTCGTGGTGGAGG
GATCCAAGCGCTCCTCGCACAGCAATGCCTACTTCTATGGCCTCTGGAAC
TCGAAGAGGATCGTGCTATTCGACACGCTGCTGCTAAACAAAGGTAAACC
GGACGACTCCGAGTTGTCAGAGGAAGAAAGGGAAAGGGTTGCACCGACGA
GGAGGTGCTGGCTGTTTGGGACACCGAGCTGGGACACCTGGAAACTGGGA
CACGTTACCAGACATTATTATCATGCAGGTTCATCCTCTTTCTGATGTCC
TGGTCTTGGATGACTTCAAGTATCCACCATTCTACTGGCATGGATCAACT
GGTACTCGGCATTCCCGTCGTGCTATCGCTACTACGATCCG
UFO01639.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ste24a-RA | 1547 | CG9000-RA | 80..1154 | 9..1070 | 4915 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17000680..17001622 | 1035..98 | 4260 | 98.2 | Minus |
| 2R | 25286936 | 2R | 17001768..17001862 | 103..9 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:15:21 has no hits.
UFO01639.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:12 Download gff for
UFO01639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24a-RA | 80..1154 | 9..1070 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:48:05 Download gff for
UFO01639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9000-RA | 65..1139 | 9..1070 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:25 Download gff for
UFO01639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24a-RA | 80..1154 | 9..1070 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:25 Download gff for
UFO01639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17000637..17001618 | 102..1070 | 97 | <- | Minus |
| 2R | 17001770..17001862 | 9..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:12 Download gff for
UFO01639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12888142..12889123 | 102..1070 | 97 | <- | Minus |
| arm_2R | 12889275..12889367 | 9..101 | 100 | | Minus |
