UFO01641.5prime Sequence
1113 bp (1022 high quality bases) assembled on 2008-10-17
> UFO01641.5prime
CAGTCGACATGCTGTTCAATCGATTTGTACTGGCCATCAAGAACCAGTCC
CGAGAAACGCTGCGTGCCTGGAGCTACCAATGCGAGTCGATTTTCGCCCA
GCGCTCGCGTCGCGTTCAGCAGTTGTTCAGTTTCTACCAGTCGGTGTATG
GAACTCAGGGTCTGAAGCAGCTATGGCGCGCCTACTACCGCCGGGAGCTG
CAGCCTCCGCTGCGGGGAATGGTGATGAGTGCAGTGGGTCTCGTCGGGCT
GAATATCAAGCGAATGGGTAGCGATGGCTTCGATTGGAACAAGGAGCGCC
TGGCCTTGTCCAACTTTGATCTGTGCCGCCGGGATATTGAGTTTATCAAC
GCCCTGCCCAACAATCAGCTGTGCGACCGCTGCCAGGCCAAGAAGATGAA
ATACTGCTACTGTCAGCTGGGCAACCAGCGCTGCAAAAAGGGCCAATCCC
AGCCGTCCACCAGCAAAGAGGCGGAGACGGATCCGGACACCAGCATCAGC
AATTGTCTGCGACCGTTGGATCTGGACGTGCGCAATGCACCGGCCGGAAC
GGTACGCATTCAGGCCCAGGACGACCAAAAATGGGAGCCGTACTTTAGCA
AAAACGAATTCAGCATTTGGCGGCGGCAGGAGCGCTCCTCCTTATACTCA
TACAAGGTTTATGCTCGATTCGACGACATCACAGCGGACGACTTCCTCCA
CGTTCAAACGGATTTGGATTACCGTCGCCAGTGGGACGACACGGCCCTAA
GACTTGAGCTCATCAGCGAGGATCCCGTCCCGGGCAGCAACTCGCATCTG
ATATACTGGGAGATGCAGTGGCCACGACTGTTCGCCAATCGCGACTACGT
CTATTGTCGCCGCTACATAAAAGACGACAACAAGAAGCTGATATTCATTT
GCAACCGCGGAGCCACGCACAACACCTATCCGGCGTTGTCTGGAAAAGTT
CGCGTCACTGACTATTGGAGCCTGATGGTCATCAAGCCCTTTCGCGGGTT
TCATGAGCAAGCCTCCACTTTGTTCCTCACGTACTTCGACGATCGGCTAC
CCATACCGCAGAATATTAGTTCTGGTAACTCAGAAACAATGCCGAGTCCT
CACCAAAAGTACT
UFO01641.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6565-RC | 2169 | CG6565-RC | 327..1433 | 8..1106 | 5225 | 98.6 | Plus |
| CG6565-RB | 2088 | CG6565-RB | 485..1591 | 8..1106 | 5225 | 98.6 | Plus |
| CG6565-RA | 1930 | CG6565-RA | 327..1433 | 8..1106 | 5225 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13374503..13375153 | 8..658 | 3255 | 100 | Plus |
| 2L | 23513712 | 2L | 13375209..13375625 | 655..1068 | 1835 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:12:21 has no hits.
UFO01641.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:52 Download gff for
UFO01641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6565-RA | 320..1440 | 1..1112 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:48:06 Download gff for
UFO01641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6565-RA | 318..1438 | 1..1112 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:19 Download gff for
UFO01641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6565-RA | 320..1440 | 1..1112 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:19 Download gff for
UFO01641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13374496..13375151 | 1..656 | 99 | -> | Plus |
| 2L | 13375211..13375675 | 657..1112 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:52 Download gff for
UFO01641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13374496..13375151 | 1..656 | 99 | -> | Plus |
| arm_2L | 13375211..13375675 | 657..1112 | 96 | | Plus |
