UFO01642.5prime Sequence
1110 bp (1008 high quality bases) assembled on 2008-10-17
> UFO01642.5prime
CAGTCGACATGCACCTGCCGCAACAGAGACCGCACCACGACATCGCTGCG
ATGTTCGCGGAAGCACAATCGGATTTCGTGCGGGTCAGCGCTCCAATGGT
GCGCTATAGTAAGCTGGAATTTCGGCGTCTAGTACGACTGAATGGAGTAC
AACTCGCGTTTACGCCCATGATGATCTCAGACTCCATTAACAACAGCGAA
AAGGCCCGCCAGAACGAGTTCTCCACGGGTGCGGATGACCAGCCGCTGAT
CGCTCAGTTTGCGGCCAAGGATCCTACGGAATTCGTCACCTCCGCCCAGC
TCATCTACCCATATGTCGATGGCATCGATCTAAATTGCGGATGTCCACAA
AGCTGGGCAATGGCGAAAGGTTACGGTTGCGGAATGCTGCGCCAGCCGGA
GCTAGTGCATCAAGTGGTTCAGGAGGTGAGGCGCACACTGCCCGGGGATT
TCAGTGTCTCGGTGAAGATGCGTCTGCTGGGAGGAGAGGAGTCCTTGCAG
CGCACTATCGATTTAGCCCGTCAGTTGGAGAGCGCGGGCGTCACCTTTCT
AACTCTTCACGGTCGGACGCCAGCCCAAAAACACTCTAAGGACACGCTAG
ACATCCCAGCCATGTCTCAGGTGCGCCAATCCCTGCAGATCCCCCTGATA
GTCAACGGCAATGTGGAGAGCTATAGGGATGCTTGCGATATGCATGAACA
GACGGGAGCAGCTGGTGTAATGGCTGCTCGAGGCTTGCTTGCTAATCCGG
CTCTCTTCAATAGCAACTATCCAGATGGTAAAACAACGCCACTGTCCTGT
GTACAACAGTGGCTAGATATAGCCTCTGCTGCCGGGGATAACCTGCTTTT
CCAGTGCTTTCACCACCACCTCACCTTTATGTATAGCGCTCAAATGAAGC
GAGATCTTCGAGTGCAATTCAACAGTTTGGGTTCCAAGAACAGGTCGGGA
CTTCCTGAAGGAGCACTACAATCTGGAATATAGTGAGGTTGACCCTCCAT
CGCTGACTACACGATTGCACGTACACCCACTTCCACCGCCAGCACGCCCG
CAATCGCCCCCGGTCGATTGAACAGCCTGGATCGAAAGACGAAATTCTTA
CGATTCCAAA
UFO01642.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10495-RA | 1371 | CG10495-RA | 87..1171 | 8..1081 | 5100 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19063531..19064471 | 97..1033 | 4505 | 99.6 | Plus |
| 2L | 23513712 | 2L | 19063381..19063469 | 8..96 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:15:08 has no hits.
UFO01642.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:56 Download gff for
UFO01642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10495-RA | 87..1146 | 8..1058 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:48:07 Download gff for
UFO01642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10495-RA | 57..1116 | 8..1058 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:10 Download gff for
UFO01642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10495-RA | 87..1146 | 8..1058 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:10 Download gff for
UFO01642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19063381..19063469 | 8..96 | 100 | -> | Plus |
| 2L | 19063531..19064526 | 97..1082 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:56 Download gff for
UFO01642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19063381..19063469 | 8..96 | 100 | -> | Plus |
| arm_2L | 19063531..19064526 | 97..1082 | 98 | -> | Plus |
