UFO01643.5prime Sequence
1128 bp (1011 high quality bases) assembled on 2008-10-17
> UFO01643.5prime
CAGTCGACATGGATTCACCTACACCGCCAATTGTCATCGAAGATTCAAAC
GGATCAGCAATGGACGCCTGTTTCACGGCATTCGACAAGGACAGTGATGA
CCGCCTGAGTCTTGCCGAATTTTCGATAATCTGTCGAGCTCTGTTCCGCA
ACGACAAGGGACACATCTACGATGTGCCCCCCGAGCGCCTTGAGCAGATA
TTCGCCGTCTTCGATACGAATGGCGATGGCTTCATCGACCGGGAGGAGTT
TAAATTCTGTTGGAACCAGTGGATAAAAACGATTGTGCGACCGGTGAACG
CGTTCCTCATTGTTGATGTACAAAATGATTTTATAAGTGGTTCCTTGGAT
ATAAGTAATTGCAGTGCACAGCAGCAAGGACACGAGATACTGGAGCCCAT
CAACAAGCTGCTGGATACGGTGGACTTTGATGCCGTCTTCTACTCATTGG
ACTGGCATCCCAGCGATCACGTTTCATTTATTGATAATGTCAAAATGCGC
CCCATGGACGAGTCCTCCGCGTTGGACTCGGATTCCGCCAAGGTGTTTGA
CACGGTCATTTTCGCAGGACCGCCGCCGATGAAGCAGCGCCTGTGGCCAC
GTCACTGCGTCCAGGACTCGTGGGGAGCCGAGCTGCACAAGGACCTCAAA
GTGGTCGACCACGGCATCAAGGTGTACAAGGGCACTAATCCCGAGGTGGA
CTCTTATTCGGTGTTCTGGGACAACAAGAAGCTATCTGACACCACTCTAA
ATGCCCAGCTGAAAATGAAGGGCGCCACGGATATCTATGTGTGCGGATTG
GCCTATGACGTCTGCGTTGGAGCCACAGCCGTGGATGCTTTGTCCGCCGG
ATACAGGACCATCCTCATCGACGACTGCTGCCGGGGTACAGATGTCCACG
ACATCGAGCACACCAAGGAGAACGTCAACACCAGCGATGGCGTTATAGTC
CACACTAATCAGTCAGGCATGGCCGAGGGTCGGGATCGTCGTCCTGAACT
GGGCTACAAACTGTATGGAGCTGAAAAGCCCCGATTCGGTTCTTTCGCAC
CATGCTTCAGGCCTCTATACCAAGCTTCTAAACATTCGTTGGGCCGCGGG
CCAGGTAATGCCTAACCTATCTAACCTA
UFO01643.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Naam-RB | 1790 | CG31216-RB | 158..1203 | 9..1049 | 5070 | 99.2 | Plus |
| Naam-RA | 1817 | CG31216-RA | 377..1422 | 9..1049 | 5070 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19697525..19697966 | 521..962 | 2195 | 99.8 | Plus |
| 3R | 32079331 | 3R | 19688176..19688365 | 92..281 | 950 | 100 | Plus |
| 3R | 32079331 | 3R | 19697310..19697446 | 385..521 | 685 | 100 | Plus |
| 3R | 32079331 | 3R | 19696551..19696656 | 281..386 | 530 | 100 | Plus |
| 3R | 32079331 | 3R | 19687212..19687297 | 9..94 | 430 | 100 | Plus |
| 3R | 32079331 | 3R | 19698073..19698155 | 969..1049 | 320 | 95.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:59:59 has no hits.
UFO01643.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:11 Download gff for
UFO01643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Naam-RA | 370..1440 | 1..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:48:08 Download gff for
UFO01643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31216-RA | 359..1429 | 1..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:41 Download gff for
UFO01643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Naam-RA | 370..1440 | 1..1063 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:41 Download gff for
UFO01643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19687205..19687297 | 1..94 | 95 | -> | Plus |
| 3R | 19688179..19688365 | 95..281 | 100 | -> | Plus |
| 3R | 19696552..19696656 | 282..386 | 100 | -> | Plus |
| 3R | 19697312..19697446 | 387..521 | 100 | -> | Plus |
| 3R | 19697526..19697966 | 522..962 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:11 Download gff for
UFO01643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15512927..15513019 | 1..94 | 95 | -> | Plus |
| arm_3R | 15513901..15514087 | 95..281 | 100 | -> | Plus |
| arm_3R | 15522274..15522378 | 282..386 | 100 | -> | Plus |
| arm_3R | 15523034..15523168 | 387..521 | 100 | -> | Plus |
| arm_3R | 15523248..15523688 | 522..962 | 99 | -> | Plus |
