UFO01644.5prime Sequence
1044 bp (948 high quality bases) assembled on 2008-10-17
> UFO01644.5prime
CAGTCGACATGGTTACGGCCACGGCGATTGCGGATCTGTGCATCTTCCTT
TTGACCTGGAACGTGGGCACCCATACGCCGCGAAATCAGGATCTGAGCTC
CCTTTTGTCCCTTAATGGCACCACCACTTGTCCGGATAACCAGCTGCCCG
ATATCTATGTAATCGGATTCCAGGAGGTGAGCACCACACCGCAGGTGCTA
AAAATCTTCAATGACGATCCGTGGGTGCTGAAGATCGCGGACTCTCTGAG
CGATCACCAGTTCGTAAAGGTGGACTCGAAGCAGCTGCAGGGAATTCTTA
TAACCATGTTCGCACAGCACAAGCACATCCCGCACATGAAAGAAATCGAG
ACAGAAGCCACGCGCACGGGACTTGGAGGGCTGTGGGGCAACAAGGGTGC
CGTAAGCATTCGACTTTCGCTCTACGGAACTGGCGTCGCATTCGTCTGCT
CCCATCTGGCGGCGCACGATGAGAAGCTGAAGGAGCGCATCGAAGACTAT
CACCAAATCGTGGACAATCACAAGTACAATGCGCAGGGATATCGCCGGAT
ATTCGATCACGACTTTGTCTTTTGGTTTGGCGATCTTAACTTCCGTCTCT
CCGGCGATATGTCCGCTTGGGATGTCCGCACGGATGTGGAGAACCAGCGA
TACGCTGATCTGCTCAAGCTCGACCAGTTGAATCTGCTCCGGGAGAAGGG
AAACGCCTTCAGCTTGCTGGAGGAGCAGCAGCCCAACTTTGCGCCCACTT
TTAAGTTCGTGGAACGCACTAATGACTACAACTTGAAGCGGCGACCCGCC
TGGTGCGATCGGATTTTGCATCGCGTGCAGAGCAACATTTATCCGGGCAT
TACCCTGAGTGCCAACCAGCTGTCTATCAGTCCCACATGGACTACACTCT
CTCCGACCACAGCCCGTATCGGCGACATCAACTACAGGTCGAGGCTGCCA
ACAGACTACACGACGAGGAGCTCCACGAAATGACGCACGATCTGCCTCAT
CTCCGGCGGACGCCAATGTTAGGCATCCTCGCAATTGTTGTTTT
UFO01644.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6805-RA | 1770 | CG6805-RA | 311..1356 | 9..1044 | 4890 | 98.6 | Plus |
| CG6805-RB | 1696 | CG6805-RB | 311..1325 | 9..1016 | 4840 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17005761..17006507 | 9..755 | 3735 | 100 | Plus |
| 2R | 25286936 | 2R | 17006787..17007049 | 754..1008 | 900 | 96.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:28:52 has no hits.
UFO01644.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:28 Download gff for
UFO01644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6805-RA | 311..1345 | 9..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:48:19 Download gff for
UFO01644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6805-RA | 309..1343 | 9..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:57 Download gff for
UFO01644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6805-RA | 311..1345 | 9..1033 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:57 Download gff for
UFO01644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17006789..17007069 | 756..1026 | 95 | <- | Plus |
| 2R | 17005761..17006507 | 9..755 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:28 Download gff for
UFO01644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12893266..12894012 | 9..755 | 100 | -> | Plus |
| arm_2R | 12894294..12894574 | 756..1026 | 95 | <- | Plus |
