UFO01645.5prime Sequence
999 bp (436 high quality bases) assembled on 2008-10-17
> UFO01645.5prime
CAATCCACATGAGCAGGATGAGCAAACTACAGGTGATCGTACACCCAGTG
AACAAAGAGTTCCAGCGCAAAAGCTGCGGTTTCGACCATGATACCCCCGA
TGATTTTGTCAAGTCTCAGTGGCAATCATGTACCAAGAGTATGGCCTATT
TGTTTTATCGCTGGTTCATGGCCATGTTCTTTGTGGTCGTGGTAATAATC
TCAATGTGGCCAGAAACGGATGATGCAACCAATTATTGGCTCTACTTTAT
CTACATGACCAACTGGGGCATATGGATGTGCATGTTGACCAACGTCTTGG
GTGCTATTCTAATCACTATATGGCATTATCATCCAAAATATGCGGATAAA
CTGTTGAATATGAAGAGCTACTTTAGCTATTTTCGCTTGTACTGGGGTAT
GCACATCATATCTCTGGTCTTGTCCATCGTCATCACCATCATCTACTGGA
GTATTCTATATGATGCTAATGAAAGCGCCTTGGATGCCACAAATGTACTC
ACTCATGCATTCAACTCGATTTGCATGTTCATCGATCTGTGGATTGTAAC
TCATCCCCTGCGTTTGCTGCATATATTTCTGCCAGTACTATTCGGAGTTG
TGTTTGCCATCTTTTCCTATATCTATCATTTGTGCGGTGGCATTAATAAG
AAAGGCTCACCTTATATCTACTATGTGATTGACTGGAGCAAACCTCAAAA
TGCCTTCACCACAGTAGTTGGCGTACTTTTGATGTCCTGTTGCATTTATG
TGCTGCTCTTTGCCTTCTTCAAACTGAGATTATTCCTCCATCGACGCTGT
CAAATGCAATTTCCTACTGCCCCCATGCGAAATCAATGGTCTACTAATGT
ATTATACGATAAATCCGGAAATGGATTCACACTCACCATCTCGCATATCA
ATGGTATTGGGCAATTTCTCTTGTCTATGAAATCAGCTTATTTGCCACTG
GCGCAAGCTTTCTATACCATCCTTGACCCCGGGCCCAGCTAGTCGTCGT
UFO01645.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13101-RB | 1589 | CG13101-RB | 425..1378 | 9..952 | 4250 | 97.2 | Plus |
| CG13101-RA | 1396 | CG13101-RA | 360..1313 | 9..952 | 4250 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8978858..8979086 | 345..117 | 1100 | 98.7 | Minus |
| 2L | 23513712 | 2L | 8978420..8978605 | 650..465 | 915 | 99.5 | Minus |
| 2L | 23513712 | 2L | 8978081..8978361 | 918..646 | 875 | 93.2 | Minus |
| 2L | 23513712 | 2L | 8978663..8978787 | 469..345 | 610 | 99.2 | Minus |
| 2L | 23513712 | 2L | 8980048..8980158 | 119..9 | 540 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:39:30 has no hits.
UFO01645.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:53 Download gff for
UFO01645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13101-RA | 352..1316 | 1..956 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:48:20 Download gff for
UFO01645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13101-RB | 415..1379 | 1..956 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:57 Download gff for
UFO01645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13101-RA | 352..1316 | 1..956 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:57 Download gff for
UFO01645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8978042..8978357 | 650..956 | 92 | <- | Minus |
| 2L | 8978421..8978604 | 466..649 | 99 | <- | Minus |
| 2L | 8978667..8978786 | 346..465 | 100 | <- | Minus |
| 2L | 8978858..8979083 | 120..345 | 98 | <- | Minus |
| 2L | 8980048..8980165 | 1..119 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:53 Download gff for
UFO01645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8978042..8978357 | 650..956 | 92 | <- | Minus |
| arm_2L | 8978421..8978604 | 466..649 | 99 | <- | Minus |
| arm_2L | 8978667..8978786 | 346..465 | 100 | <- | Minus |
| arm_2L | 8978858..8979083 | 120..345 | 98 | <- | Minus |
| arm_2L | 8980048..8980165 | 1..119 | 95 | | Minus |
