UFO01646.5prime Sequence
1072 bp (987 high quality bases) assembled on 2008-10-17
> UFO01646.5prime
CAGTCGACATGCGCACCAGTTACAAGAAAAACAGACCTTTCGACTTCAAG
CTAATTGATCTGGTGGAACCCAATCCTGTGCTCTATAAGAGATCTGGACT
CTCGAACTACGATGCCATGAAGGCGAAAACCGATATCTGGGCTCGCATAG
CCGAGATGATGGGCTGTGATGTGGACTTCTGCCTGATGCGCTGGAACAAT
CTGCACTATCAGTTTCGCAAGGAGTTTCGCCGCGCGGACACCAGTGGATC
CACCTGGCCGTACCTGGAACGCCTGCGATTTTTGGCCGAGATCCAGCCGC
CCTCCAAAGTGAAAACCAAACCCAAAACAAACAAACAGGAGGCGACCATC
CAGACGGAAACTCCTGTGCAATTTTTGTGGGACACTTTTGAGGATGGGGA
TGTTCCACAGCAGTCGAGTACGTTCATAATCGAGGAGGTCATCGAGGAGC
CCAGTGAACAGATCATCCAAGAGGAAATCATCTACGAGGAACAAGAGCCC
GCTGAAATAATCTCGCCCAGAAGCAGCTTTCTCCAGATGGACCAAATACT
GGCCCAACTAAAGGAACCGCAGCGGAGAAGGGCAGAACGAAGGATTACAG
CATTTCTGCTCAAGTGCCAGCTGCGTGCCTTGAGTAATCAGTCCGTGGAG
GACCTTAGCATCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCA
GGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGC
CTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAAC
GCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT
CATTACTGGATCTATCAACAGAGTCCAAGCGAGCTCGATATCAAATTACG
CCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTG
CCGACATGGAGCCATCCACAAACGGCATGATGACCTGATCCCCAGCGCAT
CAGCACCTGTCGCCTTGGCGTTTAATATTTGCCCATGTGAAACCGGGGGG
AGAACTGGTTCTTAATGGCCCG
UFO01646.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9948-RC | 779 | CG9948-RC | 71..725 | 8..662 | 3275 | 100 | Plus |
| CG9948-RB | 1394 | CG9948-RB | 244..898 | 8..662 | 3275 | 100 | Plus |
| CG9948-RA | 792 | CG9948-RA | 84..738 | 8..662 | 3275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6956453..6956944 | 171..662 | 2460 | 100 | Plus |
| 3L | 28110227 | 3L | 6956234..6956397 | 8..171 | 820 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:40:58 has no hits.
UFO01646.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:18 Download gff for
UFO01646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9948-RA | 77..745 | 1..672 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:48:00 Download gff for
UFO01646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9948-RA | 68..736 | 1..672 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:27 Download gff for
UFO01646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9948-RA | 77..745 | 1..672 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:27 Download gff for
UFO01646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6956227..6956397 | 1..171 | 97 | -> | Plus |
| 3L | 6956454..6956951 | 172..672 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:18 Download gff for
UFO01646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6949327..6949497 | 1..171 | 97 | -> | Plus |
| arm_3L | 6949554..6950051 | 172..672 | 99 | == | Plus |
