UFO01648.5prime Sequence
1085 bp (977 high quality bases) assembled on 2008-10-17
> UFO01648.5prime
CAGTCGACATGGAACTGAGCTGGGAGATAGTGTTCTGCGTGGGCATTGCG
GTGCTGGTTCATGTTCTGGTCTACGTGTTCGTCATGGCCAAGAAACCGAG
GAGCATTGTGGGTCGTCATGTGGTGGTCACCGGCGGCTCCAAGGGAATCG
GACTCTGTCTGGCGGTGGAGTGCGCCATGAAAGGCGCCAATGTGACGGTG
ATAGCGCGCGACGAGAAAATGCTGAGCGGAGCAGTGGCTCTGATGGAAGT
GATTCGCCAGCGGCCAGATCAAAAGTTCCAGTACAGAAGTCTGGACATAA
GCGGCGATTATGACCAGGTGGCCAAAGTGCTTGGCGAGATCGAAGATAGC
TTCGGCCCCATATACACTTTAATAAACTGTGCCGGAATGGCCATTTGCGG
TGTGTTCGAGGAGGTCTCAGTCCAGGATGTCCACAAGCTGATGAACGTAA
ACTTCTTCGGCACCTATAACTGCACCCGTTATGTCCTGCCCAAAATGAAG
AAAGCCGGCGACGGCATTATTGTAATCACTGCCTCACAGGCGGCTATGTT
TGGCATCTATGGATACGGTCCTTACTCAGCCACCAAGTACGCCCTGAGAG
CGATGGCTGAAACGATTGCAATGGAGTCTCGGGAGCACGGGGTCAGCGTC
ACTCTGGCCATGCCCTGCGATACGAATACACCCGGATTCGAGGAGGAGGA
GAAGTCAAAGCCCAGGGAAACCAAAATAATCTCTGGTGGAGGAGGTCTCA
TAGAGCCGGAAGTTATGGCGAAAGCTATACTTAAGGATGCCCTGAAGGGA
AAATTCACCTCAACTGTTGGAGCAGAAAGCTGGCTGATCACCACTTTGGG
TGGAGCATTGCTTCCTTGGGATGGCTTCTTCACAATCTTCTGCACGCATA
GTTTGGGACCACTGCGAATAGTAGCTACGCTCTGCACAGTACTTCAATAG
TGTATACGCAAATGCGCTCGAGAGATAAGCAGCCACATCGCAAGTGGAGT
CAGCAGCTTTCTAGAACATCGTTTGGGCGCGCGGCCAGGTATGTCTAATC
TTAATCAAACCTAACCTATCACTAGCCTAGGAGAT
UFO01648.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10425-RA | 1402 | CG10425-RA | 98..1102 | 8..1001 | 4770 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25261545..25262113 | 794..226 | 2845 | 100 | Minus |
| 3R | 32079331 | 3R | 25262183..25262401 | 226..8 | 1095 | 100 | Minus |
| 3R | 32079331 | 3R | 25261295..25261481 | 974..794 | 635 | 96.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:11 has no hits.
UFO01648.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:09 Download gff for
UFO01648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10425-RA | 91..1104 | 1..1005 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:48:02 Download gff for
UFO01648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10425-RA | 87..1100 | 1..1005 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:51 Download gff for
UFO01648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10425-RA | 91..1104 | 1..1005 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:51 Download gff for
UFO01648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25261261..25261480 | 795..1005 | 94 | <- | Minus |
| 3R | 25261545..25262113 | 226..794 | 100 | <- | Minus |
| 3R | 25262184..25262404 | 1..225 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:09 Download gff for
UFO01648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21086983..21087202 | 795..1005 | 94 | <- | Minus |
| arm_3R | 21087267..21087835 | 226..794 | 100 | <- | Minus |
| arm_3R | 21087906..21088126 | 1..225 | 98 | | Minus |
