UFO01649.5prime Sequence
1115 bp (994 high quality bases) assembled on 2008-10-17
> UFO01649.5prime
CAGTCGACATGCGTGACCTCGGCACCAAAATGGCCGAGCTAAAATTCGAG
GCTCCATTGGCAAAGTTCGAGGAAACGGACGAGTGGGGCGGCTGCGACTT
CATCTCGAGTCAGAATGCCATAAACGACACGCTCAACCTGAATCTGAAGG
ACTCCTCCGCCGGCGGCAAGCCGGATGCCACCAAGCTGCGGCTCCTAGAG
GATGCTGTACGCGATGCGCACGTGAGCAAGAACGGAGGAGGAGTAGTGGG
AGGAGGAGCTGGCTCCATTAGCCCCAATTGCAACACGCTCCAGGGTGGGT
CGCTTATTGAAATCGGCCTGTCCGATGTGGGATTGGTGCCGGGCGAGGGA
GCCGGCGTTGGTCTGGACGGTCTGGAGAAGCGCTCCCTGGCCGTCGGCGA
CCATGTGGACAACTTCACGGAGACCTTCGGCGGAAGTCTGGAGGATCTGG
TCAATACGTTCGACGAAAAGATAACCAAGTGTTTCGGCAACTACGAAGAG
AACGTCGAGGAGCTGGCTCCGGTGCAGGTGCGCAGCCAGGAGGAGATCAT
GAACGAATGCCAAATGTGGTGGACCATCACAGGAAACTTTGGCAACATTC
TGCCCATCGACTGGTCCAAGTCGTACACCCGTCAGATGCACATGCCCACA
CTGAATCTGGGCCAGAACCACACGAAGCAGCAGCAGCAGAATCGCAACCA
GCAGCAGCAGTTGCACAACCAGAGCCATCAGGCGTATCCACACACCAACG
GTTTGGGATCCGGATCCGGATCCGGCCTGTATGCCCAGACTCCGGGCGAT
GAGTTCAACGATCTGACCAGTGAGGACGAGGCGGTGGCCAACGATTTGGA
CATGCACGCCCTCATCCTTAACGGCTTGAACGGTGACATGGACGACCAGC
CGATTAAGACGGTAGAGGAGGTGATCAAGGAGATCGACGACATCATGGAC
GAGGCCGAAGCCCGCTGGACGAGCCGGAAACCTGCGATCGGAGGTGATCG
AGAGGCGCGAGGAGGTGCTGGCGCCCCCCCTCTATGCGGAAACTGCAATA
TCTGACACCGAACCAGCTGACGACTGTACATGGGAATGGAGGGGCTGATC
AGAACCTGAACCGAA
UFO01649.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Unc-76-RC | 3825 | CG3981-RC | 496..1594 | 8..1100 | 5130 | 98.3 | Plus |
| Unc-76-RA | 2860 | CG3981-RA | 386..1484 | 8..1100 | 5130 | 98.3 | Plus |
| Unc-76-RB | 2970 | CG3981-RB | 496..1594 | 8..1100 | 5130 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2081105..2081659 | 8..562 | 2775 | 100 | Plus |
| X | 23542271 | X | 2090969..2091450 | 563..1042 | 2140 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:29:08 has no hits.
UFO01649.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:33 Download gff for
UFO01649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Unc-76-RB | 491..1566 | 1..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:48:23 Download gff for
UFO01649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Unc-76-RA | 379..1454 | 1..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:05 Download gff for
UFO01649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Unc-76-RB | 491..1566 | 1..1073 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:05 Download gff for
UFO01649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2081100..2081659 | 1..562 | 99 | -> | Plus |
| X | 2090969..2091450 | 563..1042 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:33 Download gff for
UFO01649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1975133..1975692 | 1..562 | 99 | -> | Plus |
| arm_X | 1985002..1985483 | 563..1042 | 98 | -> | Plus |
