UFO01652.5prime Sequence
1090 bp (979 high quality bases) assembled on 2008-10-17
> UFO01652.5prime
CAGTCGACATGTACAGCGACATAAGCTTGGAGAATCGTCATGACTACGAT
TATAGGCTGGAACTGCTGCAGCGCAAGGTGGACGATCTGTCAGATACACA
GAATATAGCTGAGGATCGGACAACCCGCACCAAGACCGAATATGCAGTCC
TTCAGGCGCGTTATCACATGCTCGAAGAGCAGTACCGAGAGTCGGAACTG
CGTGCCGAGGAGCGTTTGGCAGAGGAGCAGAAGCGGCACCGCGAGATTTT
GGCCCGCGTGGAGCGTGAAGCCTCGCTGCAGAACGAGAACTGCCAGATGA
AGATCCGTGCCACCGAGATCGAGGCAACGGCACTGCGGGAAGAAGCCGCC
CGACTGCGTGTCCTGTGTGACAAGCAGGCCAATGACCTCCATCGCACCGA
GGAACAGTTGGAGCTGGCGCGCGACCAAATCGGCGTCCTGCAACAGGAGC
ACGAGGAGCAGGCACAGGCACTGCGCCGCCACGAACAGGAGAAGAAGTCC
ACCGAGGAGCTGATGCTGGAGCTGGGCCGGGAACTGCAGCGTGCTCGCGA
GGAGAGTGGAGCCCGGGCAATGCCGACCACATCGCCGGAGAGCATAAGAC
TGGAGGAGCTGCATCAGGAGCTCGAGGAGATGCGCCAGAAGAACCGAACC
CTCGAAGAACAGAACGAGGAGCTGCAGGCCACGATGCTGACCAACCAGGC
CACCATGCTGACAAATGGCGTGTAGCAGGTCGCCATCTGCTGAACGGAAC
ACTCAACAGTTTGGCTCAGAGCTCGAGGAGATGTCACAAGCCCAGCTACA
ACAGGCCTTCCAGGAAAAGGAGGATGAAAATGTTCGGCTTAGCACTATAT
TGATACCATTCTACTCAACATCGTGAGACTATCCTCAATGCTGGAAGTCA
AGCCCATGGAGCGAAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAGTGTCATAATCATATCATAATCATATCATATCACACCTAGCT
AGGAGATTCTGGTCATGACTATGCTGGAATTCCACAATAAACCCCGGCGC
ACGACGTTAGACCATCGATGGATTCTGGAGTCTACTGTAA
UFO01652.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nuf-RB | 2373 | CG33991-RB | 258..1175 | 6..917 | 4425 | 99.2 | Plus |
| nuf-RA | 2696 | CG33991-RA | 1331..2248 | 6..917 | 4425 | 99.2 | Plus |
| nuf-RC | 3446 | CG33991-RC | 1331..2248 | 6..917 | 4425 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14230654..14231112 | 190..648 | 2295 | 100 | Plus |
| 3L | 28110227 | 3L | 14230175..14230310 | 56..191 | 680 | 100 | Plus |
| 3L | 28110227 | 3L | 14231177..14231325 | 649..795 | 630 | 98 | Plus |
| 3L | 28110227 | 3L | 14231924..14232052 | 793..917 | 450 | 95.3 | Plus |
| 3L | 28110227 | 3L | 14213153..14213203 | 6..56 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:41:00 has no hits.
UFO01652.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:20 Download gff for
UFO01652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nuf-RC | 1326..2248 | 1..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:48:25 Download gff for
UFO01652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nuf-RB | 253..1175 | 1..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:29 Download gff for
UFO01652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nuf-RC | 1326..2248 | 1..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:29 Download gff for
UFO01652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14213148..14213203 | 1..56 | 96 | -> | Plus |
| 3L | 14230176..14230310 | 57..191 | 100 | -> | Plus |
| 3L | 14230656..14231112 | 192..648 | 100 | -> | Plus |
| 3L | 14231177..14231325 | 649..795 | 97 | -> | Plus |
| 3L | 14231927..14232052 | 796..917 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:20 Download gff for
UFO01652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14206248..14206303 | 1..56 | 96 | -> | Plus |
| arm_3L | 14223276..14223410 | 57..191 | 100 | -> | Plus |
| arm_3L | 14223756..14224212 | 192..648 | 100 | -> | Plus |
| arm_3L | 14224277..14224425 | 649..795 | 97 | -> | Plus |
| arm_3L | 14225027..14225152 | 796..917 | 96 | == | Plus |
