UFO01653.5prime Sequence
1123 bp (1024 high quality bases) assembled on 2008-10-17
> UFO01653.5prime
CAGTCGACATGACCTCGTCCGAAACATCAGCATCGGCTTTCTCGAGCTCG
GACACAGCCGCCCTGGAGCGTCAGGCGGAAGTGGAGCAGCCGGTGACCTT
GGAACAGATCTGGAACGAAAACCACCGGCGATCGAGCGTAGATTGGATTC
GCAAAAGTGGTTACAAAAGGGTTTGCCTGCAATTCCCAGACGACTATCTG
CCCCACAGCAATGCAATTAGTGTGGGCCTGAAGGAGCTACTTGCGCCGGA
GGACGTGAAAGTCTTCATCCTGGCGGACACCACATACGGAAGCTGCTGCG
TGGACGAGATTGCGGCTGCCCATGTGGATGCAGACAGTGTGATTCACTTC
GGAAACGCATGTCGCAGTAGGGCCGCCCGCCTGCCGGTACTTTACCTTTA
TCCAGAGTTGCCGCTGGATGTGAATGTTCTCCTGAGCAAGCTGCAAGGTC
TGCGCGCGGAGAGCATAGATCGACAGGTATGCGTGTACCTGGACATTGGG
TACCAGCATGTGTACGGGGAAAAGCTAAAGAAGCAGCTGTCCGAGATCCT
GGAGCCCAAAGAACTGCTGCTGGAACTGTTTCCGCCCATCGAGGCAGAAT
CAACGACAACTAGGGAGACCACGAACCTTGAGAGGATTTGTATTTTCATA
GGCGCCGATAACCAGCGATTCGCTAATCTCTCTCTGACCGCTCCAGCTGC
CGTGCAATGGCACATCTACGATGGATCATCTGACAGTCTCAGCTCAAAAA
ATCCCCTCACGGCTCAGTTCATCCGCCGTCGCTACTTCCACATCGAAAAG
TGTAAGGATGCACAAACACTGGGACTCATTGTGGCCACTCTTTCGGCTGA
TGTTACTTAGATGTGGTGACGCGACTGCAAACAATGGCGAAGGCAGAGGC
ATTAAGACGCAGCTTATTTCCGTGGGCAGGATTAACCCAGCCAAACTCGC
TAACTTCTGGAAATCGATTGTTTTGTCCTGATCGGTTGCCCGTCATATAT
GTACGACTCCAAGAGTACTATAGCCCATTTTCTCTTTCTTCGAGCGAGAA
TGGCCTGATTCCCGCCTGGCATGAAACCGAGCTTAGTTACGATTTCACAA
CTTCGCGGAGGAGAGCACTTCTG
UFO01653.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7265-RA | 1510 | CG7265-RA | 86..1158 | 9..1071 | 5025 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14892773..14893655 | 1044..170 | 3995 | 98.4 | Minus |
| 3R | 32079331 | 3R | 14893706..14893869 | 172..9 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:21 has no hits.
UFO01653.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:16 Download gff for
UFO01653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-RA | 77..1157 | 1..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:48:27 Download gff for
UFO01653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-RA | 77..1157 | 1..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:55 Download gff for
UFO01653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-RA | 78..1158 | 1..1071 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:55 Download gff for
UFO01653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14892788..14893654 | 171..1029 | 98 | <- | Minus |
| 3R | 14893708..14893876 | 1..170 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:16 Download gff for
UFO01653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10718510..10719376 | 171..1029 | 98 | <- | Minus |
| arm_3R | 10719430..10719598 | 1..170 | 97 | | Minus |
