UFO01654.5prime Sequence
1084 bp (980 high quality bases) assembled on 2008-10-17
> UFO01654.5prime
CAGTCGACATGAATCCCTGTGTGCTGCCCACCCCATTGCCCGATCTGGAT
GGCGACAAGCGTTGGCACAGCATACATCGCCGGTTCATCTCCGATTGCCG
CGAAAAGGATCCGGATGTGATATTCCTCGGCGACTGCATCTTCGAGACCG
TCCAGGACACGGAGGCCTGGAATAAGTACTTTGCGCCGCTGCACTGCCTT
AACTTCAGCATTCGCGACGACTGCACCGAGCACGTACTGTGGCGCATCGA
AAACGGTGCGCTGGACAATGTGAATCCCAAAATCGTCGTCCTCCATGTGG
GCACCAATAATGTGCGGAACAGCGCGGAGGAAGTGGCCGAGGGTGTGCTC
GCGAACGTAACGAAAATCCGGCAAAAGCTGCCCAACGCCTATATCGTTTT
GCCCTCGCTACTGCCGCGTGGCCAGCAGCCCAATAAGTTGCGCGAAAAGA
ATGCCAAAATCAACGAGGTGGTCAATGGATTGACCAAGGGCTTGTATCGC
GTCCAGACGGTGGCCATTGACAAGGGTTTGGTCCAGACCGACGGCAGTAT
CAGTCATCACGATATGTTCGACTATAAAAATCTAACCAATGCTGGAGCGA
AAAAGATATTAGAACCACTCTACGATCTGCTTTCTCAAATTCTCAACGAA
AACGAACCTGAAAACGATCTCACCCCCTCCGAAGCAAGCTTTCTAGACCA
TTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATC
ATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTT
GGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAA
ATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGAGTCCAAG
CGAGCTCGATATCAAATTACGCCCCGCCCTGCCCCTCATCGCAGTACTGG
TGTATCATAGCATTCTGCCGACATGGAAGCCATCACAAACGCATGATGAA
CTGAATCGCAGCGGCATCAGCCACCTTGTTCGCCTGCGTATATATTTGCC
CATGGGTGAACCGGGGGCGGAGAATGTCTATATG
UFO01654.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Paf-AHalpha-RB | 1435 | CG8962-RB | 448..1126 | 5..683 | 3380 | 99.9 | Plus |
| Paf-AHalpha-RA | 1507 | CG8962-RA | 520..1198 | 5..683 | 3380 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15784665..15785064 | 404..5 | 1985 | 99.8 | Minus |
| X | 23542271 | X | 15784318..15784596 | 683..405 | 1395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:39:36 has no hits.
UFO01654.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:59 Download gff for
UFO01654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Paf-AHalpha-RA | 516..1201 | 1..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:48:28 Download gff for
UFO01654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Paf-AHalpha-RB | 440..1125 | 1..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:00 Download gff for
UFO01654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Paf-AHalpha-RA | 516..1201 | 1..687 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:00 Download gff for
UFO01654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15784314..15784596 | 405..687 | 99 | <- | Minus |
| X | 15784665..15785067 | 1..404 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:59 Download gff for
UFO01654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15678347..15678629 | 405..687 | 99 | <- | Minus |
| arm_X | 15678698..15679100 | 1..404 | 99 | | Minus |
