UFO01655.5prime Sequence
756 bp (310 high quality bases) assembled on 2008-10-17
> UFO01655.5prime
CAATCCACATGCCCGATAGTTGTACGGCGGACCTACGAAGTCGCCGCCGC
GAAAATCCAATCGACCGCAACGGCAATATTGGCGGCACAGGCAAGGAGCA
GGCGACAAGCACCAGGCCTAATCTGACAACCGAATATACCCAACGGACTA
ACGAAATGACTGCGAGCAAGGAAGGTCAAGAATCCAGGCGAACCCTCACC
GACAGTTCCGCAGAGGACGTCAGGAATACAGGATCAAGGACCAGGACCAA
CGACTACCAAATGTGGCGCAATGAACTTGCTATGAACACGGACAGCAGCT
CCGTTCAGCCAGAAAAGCGAGAGGAACGAAGCCACAGAACAGGAAACTCT
AATGCGAAACTCATCGATGCCGTAGATGTTGTTCTTCGCGTTCTCCTCGT
CATTACCTTCTTCAAGTTGGAGACGATGACAGCATTCAAACGGGAAATCC
ACGAGGAAGAGCTGTGGCTATACAAGAACGCAAGGCGACCGGACATTGTC
AGGGGCGGGGAGCTGCTCTTCTGGGTGATAGTGGCTCCCTTTCTGGTCAC
TATCGCCTTCTACTGGTACACAAGAGACAGGCGGCTCTGCATCGCTGTGA
TACCTCTGTTTATCGCACTGCTGGTTGCAGTTAGTCGCACTGCGACTACC
ACCACCACTGGCAGATGTGATCATCGCGGGCTGATTGGCCTGTTTGCAGC
TATATAGCTACACACATACTATCCCTTCTTCTTTCTGCCTGATGCAGCTA
CCCTGT
UFO01655.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-RE | 1509 | CG12746-RE | 196..771 | 9..584 | 2760 | 98.6 | Plus |
CG12746-RD | 1381 | CG12746-RD | 161..643 | 102..584 | 2295 | 98.3 | Plus |
CG12746-RB | 1339 | CG12746-RB | 119..601 | 102..584 | 2295 | 98.3 | Plus |
CG12746-RE | 1509 | CG12746-RE | 1103..1274 | 580..745 | 620 | 93.6 | Plus |
CG12746-RD | 1381 | CG12746-RD | 975..1146 | 580..745 | 620 | 93.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5566086..5566398 | 100..412 | 1460 | 97.8 | Plus |
3R | 32079331 | 3R | 5566467..5566638 | 413..584 | 845 | 99.4 | Plus |
3R | 32079331 | 3R | 5565361..5565454 | 9..102 | 470 | 100 | Plus |
3R | 32079331 | 3R | 5567029..5567188 | 580..733 | 455 | 94.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:26:18 has no hits.
UFO01655.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:30 Download gff for
UFO01655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RE | 193..773 | 3..585 | 97 | <- | Plus |
CG12746-RE | 1109..1283 | 586..752 | 92 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:48:29 Download gff for
UFO01655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RE | 193..773 | 3..585 | 97 | <- | Plus |
CG12746-RE | 1109..1283 | 586..752 | 92 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:25 Download gff for
UFO01655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RE | 193..773 | 3..585 | 97 | <- | Plus |
CG12746-RE | 1109..1283 | 586..752 | 92 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:25 Download gff for
UFO01655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5565358..5565453 | 3..101 | 96 | -> | Plus |
3R | 5566088..5566398 | 102..412 | 97 | -> | Plus |
3R | 5566467..5566634 | 413..580 | 99 | -> | Plus |
3R | 5567030..5567209 | 581..752 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:30 Download gff for
UFO01655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1392189..1392356 | 413..580 | 99 | -> | Plus |
arm_3R | 1392752..1392931 | 581..752 | 92 | | Plus |
arm_3R | 1391080..1391175 | 3..101 | 96 | -> | Plus |
arm_3R | 1391810..1392120 | 102..412 | 97 | -> | Plus |