UFO01656.5prime Sequence
986 bp (898 high quality bases) assembled on 2008-10-17
> UFO01656.5prime
CAGTCGACATGCTGCTGCTACTATGTGTTAATATGTCGGGGACGCAAATG
TCTGCCTTCCTGAGAAAGTATCTAGCCGACGAGGACAAAAAAATTCGTGC
GCAATTCAAAGAAAGCGATCCTAACAACAAATTGATTCTATGGATGCACG
AAAAAACGAGAATAACCGAGGAGGACTTGGCACGCCCATACACCGAGGAC
GAGGTAAAGGAGCTTTGTCTACGCACCAAAGTGAAGGTTGATATGACCGC
TTGGAATTGTCTGTGGGAAGCCAAAAAGAGGTTTGAAGCAAAAGGACGTT
TTGTGAACAAGTCTGAGAGATTCATCAACCGAATGTATATGAAAGCGGTG
CGCAGAAAGATGGTCCAACCGTATCCGGAGGAGTTTGTGGCCCAGCGAAG
AGAAATAGTTGCAGCCGAGACTAAGAAGCAGAACATCAGCCGATTGGATA
GATGGCAAAAGAAAAAGAGTCAAAACCTATCAGCACCAGAATCCTCTCCA
GACGCTCATGCATCTTCTAATGACGCGGTGCAGAGCCACGAGGACCAAGC
AAACACAAATCTTAGTTCACTGTCTCAAATGAACTTTCAAGTGGAAGCGA
TGGCTCCGCCAGGCGTGTCGTCATCTGATCTTAGCGGCATCGGAGACGAT
GAGGACGAACAGCAGCAGTCAGGATTTCAGGATGAGAACATCAACCGTCC
AGAGACAGAGATTAATGAGAATTCGGTGAGATGTGATCCAATTAATTTAG
GAAGGATGCGGACTGGATGTATAAATTCGCAAGCAAATACAGTTTCCGGA
ATACGGAGTCTGATCCGGACTACTATATGTTTGGCACCCAATGAGCACAT
AGTACGACCCACGTCGACTCAGAGCTGACGATCAGTAAACTGTCAGAGAC
AAGATGATGAAGCTGGTAGTGTGATCATATCGGAAGCTTGTCATGACGTC
ATGATCGAGACTTCCTTTCAATCGATGACGATGACT
UFO01656.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cav-RA | 1520 | CG6219-RA | 378..1309 | 9..927 | 4345 | 98.6 | Plus |
| cav-RD | 1649 | CG6219-RD | 523..1438 | 25..927 | 4265 | 98.6 | Plus |
| cav-RB | 1226 | CG6219-RB | 102..1015 | 27..927 | 4255 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24222535..24223251 | 158..871 | 3435 | 99.6 | Plus |
| 3R | 32079331 | 3R | 24222343..24222474 | 27..158 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:15:47 has no hits.
UFO01656.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:20 Download gff for
UFO01656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cav-RA | 378..1309 | 9..927 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:48:39 Download gff for
UFO01656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cav-RA | 384..1315 | 9..927 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:34 Download gff for
UFO01656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cav-RA | 378..1309 | 9..927 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:34 Download gff for
UFO01656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24221908..24221925 | 9..26 | 100 | -> | Plus |
| 3R | 24222343..24222474 | 27..158 | 100 | -> | Plus |
| 3R | 24222536..24223251 | 159..871 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:20 Download gff for
UFO01656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20047630..20047647 | 9..26 | 100 | -> | Plus |
| arm_3R | 20048065..20048196 | 27..158 | 100 | -> | Plus |
| arm_3R | 20048258..20048973 | 159..871 | 99 | == | Plus |
