UFO01657.5prime Sequence
959 bp (870 high quality bases) assembled on 2008-10-17
> UFO01657.5prime
CAGTCGACATGAGTTCCGCTGAGTACTACCCATTCAAGTGCACACCCACT
GTCTACCCGGCGGATCCCTTCGATCCCGTCGAGGATGCGGCTATTCTGCG
CAAGGCGATGAAAGGCTTCGGCACCGACGAGAAGGCCATCATCGAGATCC
TGGCCAGGCGTGGCATCGTCCAGCGTTTGGAGATCGCTGAGGCGTTCAAG
ACCTCGTACGGCAAGGACCTGATCTCGGACCTCAAGTCCGAACTGGGCGG
CAAATTCGAGGATGTTATCCTGGCTCTGATGACGCCGCTGCCCCAGTTCT
ATGCCCAGGAGCTGCACGACGCCATCTCGGGACTGGGAACCGACGAGGAG
GCCATCATCGAGATCCTCTGCACGCTGTCCAACTACGGCATCAAGACCAT
TGCCCAGTTCTACGAGCAGAGCTTCGGCAAGTCCCTAGAGTCCGACCTGA
AGGGCGACACCAGTGGCCACTTCAAGCGGCTGTGTGTCTCGCTCGTCCAG
GGCAACCGGGATGAGAACCAGGGCGTGGACGAGGCCGCGGCCATCGCCGA
TGCCCAGGCTCTGCACGACGCCGGCGAGGGACAGTGGGGCACAGATGAGT
CCACCTTCAACTCGATCCTGATCACCCGCTCCTACCAGCAGCTGCGCCAG
ATCTTCCTCGAATACGAGAATCTGTCGGGCAACGACATCGAGAAAGCCAT
CAAGCGGGAGTTTAGCGGCTCCGTGGAGAAGGTTTTCCTGGCCATCGTCA
AGTGCTGCAAGTCCAAGATCGACTACTTTTCGAGCGCCTGCACGACTCAA
TGGCCGGCATGGGCACCAGACAGACGCTGATCCGCATCATGTCAGCCGTC
GGAGATCGATCTGGGTGACATCAGAGCATCGACAGTACGCAGAGCTTGAG
TCTGATCAGACGACTTTCGGAAACTACAGCTACGTCTTGCATGCTGACTC
TTAGCAGCT
UFO01657.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AnxB9-RF | 1457 | CG5730-RF | 95..965 | 9..873 | 4185 | 99.1 | Plus |
| AnxB9-RE | 1456 | CG5730-RE | 94..964 | 9..873 | 4185 | 99.1 | Plus |
| AnxB9-RC | 1432 | CG5730-RC | 70..940 | 9..873 | 4185 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21068067..21068777 | 37..747 | 3525 | 99.7 | Plus |
| 3R | 32079331 | 3R | 21068837..21068969 | 747..873 | 400 | 95.5 | Plus |
| X | 23542271 | X | 16418705..16418779 | 383..309 | 225 | 86.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:08:54 has no hits.
UFO01657.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:00 Download gff for
UFO01657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AnxB9-RC | 62..942 | 1..876 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:48:41 Download gff for
UFO01657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AnnIX-RB | 74..952 | 1..873 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:32 Download gff for
UFO01657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AnxB9-RC | 62..942 | 1..876 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:32 Download gff for
UFO01657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21067462..21067499 | 1..38 | 92 | -> | Plus |
| 3R | 21068069..21068777 | 39..747 | 99 | -> | Plus |
| 3R | 21068838..21068969 | 748..873 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:00 Download gff for
UFO01657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16893184..16893221 | 1..38 | 92 | -> | Plus |
| arm_3R | 16893791..16894499 | 39..747 | 99 | -> | Plus |
| arm_3R | 16894560..16894691 | 748..873 | 95 | == | Plus |
