UFO01659.5prime Sequence
1115 bp (1003 high quality bases) assembled on 2008-10-17
> UFO01659.5prime
CAGTCGACATGAATGTTTGTCGCCTGTGCTTGTCGAAGGAACCCAATTTC
CCCGTTTTCGGTGCAAATGGATCGACTGCTCTGCAGATAATGGTCTGCAC
ATCGCTGGAGATCGAGCCCGGCGACGGTCTGCCACAGCACATATGCACCA
TGTGTCGGCTGCAACTGGAGGAGATGCACTGCTTCCGACGACGCTGCCTC
GCAGCCGATCGCAAATTGAGGCGCCACAAGGCGTTGCAGCGGCAGGGTGT
CAAGTCGCAGCTGAGTGAAGTGGAGGAGGAGCGGGGCTCCGGGGAAGGAT
GCACGCAAACTGGCTGCGCCGAGAACAATGCCCAGTGGCGCCAGCAGGCC
GCCCAGCTCATTAGCAGCGAGATCGACGCGTATAAAAAGGAGCTGCTCAG
CACTTGCAAGCAAGCTGTGCGGGCGGAAATCGAGCTGGAGCTGCGGGCGG
AACTCGAAGAGGTCATCATACCCGAAGCCAAGCAGCAGTTGCGACTGAGC
GTTCTTGACGACGTGTTTGTCGAACTGGAACGGTACTTTGTGCGCAAGCG
CAATGAGGCGACCTATGAGATGAAGATGAACTTAAGCAGTCCGCTGCCTG
ACGAACAGACCGCTGGCTTCTACGAAACAGACATGGGCCAGGAGCTAAGG
GAGCAGAGCGATAACAGCGTGGTGGAGTTACTGGACGATGAACCAGAAGC
CAGCAGACAGCCAGCTGCAACGCCACTAGTTGCTGTGCCCATGGTTGAGA
TCAACATGAACGACCCGCAGCTGAGTCATCTGCGCAACGACTATAGCAAG
GACACCTTTCTGGGTGCCAACACAACTGCCTTAGAGGATGTAAAAACCCC
ATCGCCGTGTCGAAAGAAGTGCGCTTTATGAGCCCCAAGCAGACGACCGA
TAACTGTGCCGAAAGCACAGTTCCTTCAGACAAATGCAGCAGTTCGTACG
CCGATTTCAAAGTTGGTGTGCGCTGTCGTCTAAGAGGAGCGGATAAGCTA
AATAACCCCGGTGACGGCAAGCCTTCTAGAACATTCGTTTGGCCGCGCGG
CCAGGGTAATTGCTATCCTAATCTAATCATAATCATAATCCAACTAGCTA
GGATCTGTCTAGGTA
UFO01659.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31457-RB | 1342 | CG31457-RB | 200..1212 | 7..1016 | 4870 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23127105..23127782 | 684..7 | 3375 | 99.9 | Minus |
| 3R | 32079331 | 3R | 23126716..23127046 | 1010..684 | 1395 | 97.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:08:51 has no hits.
UFO01659.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:57 Download gff for
UFO01659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31457-RB | 194..1217 | 1..1023 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:48:21 Download gff for
UFO01659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31457-RB | 197..1220 | 1..1023 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:30 Download gff for
UFO01659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31457-RB | 194..1217 | 1..1023 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:30 Download gff for
UFO01659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23126717..23127045 | 685..1009 | 97 | <- | Minus |
| 3R | 23127105..23127787 | 1..684 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:57 Download gff for
UFO01659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18952439..18952767 | 685..1009 | 97 | <- | Minus |
| arm_3R | 18952827..18953509 | 1..684 | 99 | | Minus |
