UFO01660.5prime Sequence
1122 bp (1002 high quality bases) assembled on 2008-10-17
> UFO01660.5prime
CAGTCGACATGGAACAAAATGCGAAGCCTAAACGCTCCTTTAAGCGTCCG
TTTACCTTTCCAAAGAACTGTGTTTACCGCCCTCTACGTCAGATAAGCAA
CATGGAGCGTAGCCAGAAGCTGTCCGCCGAACAACCCACCTACTTCACGC
TCAATGCACCGCCCTCGTTGGTTCCGGCCAAGAAGTACTCGGATATCAGC
GGTCTGCCCGCTCCTTATGCCGATCCGCACACGAAACTAAGGTTCGCCAG
CGCCGACGAGTACGCGTCCATGCAGCACATGCCCTCGGACATCGTCAATG
GCTACCTCATGGTGCGCGGCTATACCAGCGCCGTGGGAGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAG
TCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAG
TACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAAC
GGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCG
TATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTG
GCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGAC
GAAAAACATATTCTCAATAAACCCTTTAGGGAATAGGCCAGGTTTTCACC
GTACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTC
GTGGTATTCACTCCAGAGCGATGAAACGTTTCAGTTTGCTCATGGAAACG
GTGTACAGGTGAACACTATCCATATCACAGCTCACGTCTTTCATGCATAC
GAAATCGATGAGCATCATCAGGCGGCAGATGTGAATAAGCGATAAACTTG
GCTATTTTCTTACGCCTTAAAGGCGTAATATCACTGAACGATTGCTAAAG
TACATTGGAGCAACTGAACTGA
UFO01660.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12659-RC | 896 | CG12659-RC | 36..365 | 9..338 | 1650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8591306..8591502 | 338..142 | 985 | 100 | Minus |
| X | 23542271 | X | 8591562..8591694 | 141..9 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:39:33 has no hits.
UFO01660.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:56 Download gff for
UFO01660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12659-RC | 36..371 | 9..347 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:48:22 Download gff for
UFO01660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12659-RB | 298..633 | 9..347 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:58 Download gff for
UFO01660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12659-RC | 36..371 | 9..347 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:58 Download gff for
UFO01660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8591306..8591502 | 142..338 | 100 | <- | Minus |
| X | 8591562..8591694 | 9..141 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:56 Download gff for
UFO01660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8485339..8485535 | 142..338 | 100 | <- | Minus |
| arm_X | 8485595..8485727 | 9..141 | 100 | | Minus |
