UFO01663.5prime Sequence
1125 bp (1015 high quality bases) assembled on 2008-10-17
> UFO01663.5prime
CAGTCGACATGGAGAACGCACTTAAACGGCGATCTTTAACGCTCAGCACG
CGTCTGCTGCATAAGCGCCACAGTGCTTCACCACAGAGCGTACGCACAGG
GCACAATGTAAGTGTATCCGTGGACACTCCCGGCTCGCCCAACTCCTCAG
CAGTAGTGGGAATCACGTCCGACCTGGAGAGCACTCCACCACACAAACAC
AAGCCCAGCTTGGACGACAGTGTGGACTTCTCGCCCCGTTTGGACATCAG
CCTTTCGCCCAGCTGCCTCTTCTCCCAGACACTGGCCACCGAAAGTCCGG
AGGTGGGCTGGCGCTGGAACCGAAGCAGCAATGCCACCACGGACAGTGGC
TTCGACTCCGCGGAAATAGGCAGTTTGAGCCAGCGCGAACGACGCCGGCA
GATAGCCTTTAAGGGCGTCGAGGATAGACGCAGCCAACTGGACAATGAGC
AGTGGCGGGCACAGCAGATGCGGGCTAATGTTCTTCTTAAGGAGCGCTGT
GCTAGGCTCAATAGCCAGTTGGAGCAAATAGCTGTGTCCGAACCAGTAAT
GCCACTAAAAACTCCTAAAGCTCCGTCACCTGTTGCTCCCCGCACAAGAT
TAACCTGCACGAAGGCTACGCCAGAGCCAGTGCTTTCCCCTGTAGCTGCC
TCCGATCCAATGGCAGACTTCCTCAACGACTCGGAGACGGATCTCTTCCT
GCTTGAGGCCTCCCAGCAACTGGAGTCGAAAATAGAACACCATGAACCTC
CCAAATCAAGCACAAGCACCACACCCACTAGGCACCACACGGCAAAGCGA
CCCTCCTTCTACATGAAATTTCTGGAAGACGAAAGCGAGGGCGAGGACTG
GCTAAACGCCCTAGAAGAGGCAGTGCAGCAGCCACAATGCCGAAGAAGCC
GCGCACCTCGCTGCAGCGCTACAAATCAATGCCAACCACAGGGGATTCGT
GCAGCGAGTGTCCACCCTGACCAATGGTGACGGCCAATTCAAATGCCTGC
ACAGTGCCTCCTCCGCATCTGGTTCGAAGCTTAGGATACTCCGCGCATCA
AACGGAAGCCAGTTCGCACGCTCTGTCCCAGCACATTCGCATGGCGCGCG
CAAATTTTGGGAGCCGGAAGCAGCT
UFO01663.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6425-RA | 2101 | CG6425-RA | 126..1243 | 9..1119 | 5205 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26716131..26717139 | 1079..75 | 4690 | 99 | Minus |
| 3R | 32079331 | 3R | 26717198..26717264 | 75..9 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:00:10 has no hits.
UFO01663.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:17 Download gff for
UFO01663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6425-RA | 122..1226 | 2..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:48:46 Download gff for
UFO01663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6425-RA | 118..1222 | 2..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:47 Download gff for
UFO01663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6425-RA | 122..1226 | 2..1104 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:47 Download gff for
UFO01663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26716115..26717138 | 76..1094 | 98 | <- | Minus |
| 3R | 26717198..26717268 | 2..75 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:17 Download gff for
UFO01663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22541837..22542860 | 76..1094 | 98 | <- | Minus |
| arm_3R | 22542920..22542990 | 2..75 | 94 | | Minus |
