UFO01665.5prime Sequence
1090 bp (995 high quality bases) assembled on 2008-10-17
> UFO01665.5prime
CAGTCGACATGTCCGATTTGGGAAGTGGAGATGATGGCATCTCAGGATCA
AAATATAATGTTGCAAATATGGAGGGTTCCTCAAGTAGGAACGACTTCGA
TTCTTCTGCTAAAGGAGGAAGCGGCGTCGAACAGGAATTGGCTACGAAAA
TGTTGCAAATACAATCTAAACGATTTTATTTGGATGTAAAACAAAATAGA
AGAGGCCGTTTTATAAAGGTTGCTGAGATTGGCGCTGATGGTAGACGAAG
TCAAATTTACTTGGCTCTTTCAACTGCAGCCGAATTTCGTGACCATTTAT
CCTCATTTAGCGATTACTACGCTTCTCTAGGTCCACCAAACACCGACAAT
TTGCCGGAAGATGGTAAACTTAAATCTGAAATGATGATAAAAGATTACAG
AAGGTATTACTTGGACTTAAAAGAAAATGCGCGTGGCCGATTTTTACGGG
TATCGCAAACAATAACAAGAGGGGGGCCTAGATCTCAAATCGCTTTACCG
GCTCAAGGCATGATCGAGTTTCGTGACGCTCTTACAGATTTGTTAGAAGA
GTTTGGAGCTAATGATGGAGGGTTTAAAGGAGATTTACCGGAAGAGCGAC
ACATGAAGGTGGATAATAAAAATTTTTATTTTGATATCGGACAAAATAAT
CGAGGAGTGTACATGCGGATAAGCGAAGTGAAAAATAACTTCCGGACTTC
GATAACTATTCCAGAGAAATGTTGGATTCGCTTTCGAGATATTTTTAATG
ATTATTGCGAGAAAATGAAAAAATCGTCCGACTCAATTACTGCCGAAATT
AACTTACCTACATCTTCAAATAGTCTTAAGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGTCATAATCATATCATAATCATAATC
ATAATCACACTAGCCTAGAGATCCTGTCATGACTAGTGCTTGGATCTCAC
ATAAAAAACGCCCGGCGGCACCGAGCGTTCTGAACATTCCGATGGAGTTC
TGAGGTCATACTGGATCTATCAACGGATTCAGGCGAGCTCGATTCATACG
CCGCCTGCACTCATCGCAGAATGGTTGTAATTCTAGCATC
UFO01665.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pur-alpha-RE | 2719 | CG1507-RE | 394..1214 | 9..829 | 4105 | 100 | Plus |
| Pur-alpha-RC | 1238 | CG1507-RC | 239..1059 | 9..829 | 4105 | 100 | Plus |
| Pur-alpha-RA | 1313 | CG1507-RA | 314..1134 | 9..829 | 4105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 565601..565752 | 678..829 | 760 | 100 | Plus |
| 4 | 1348131 | 4 | 564540..564664 | 449..573 | 625 | 100 | Plus |
| 4 | 1348131 | 4 | 564359..564482 | 329..452 | 620 | 100 | Plus |
| 4 | 1348131 | 4 | 560469..560583 | 113..227 | 575 | 100 | Plus |
| 4 | 1348131 | 4 | 565409..565517 | 571..679 | 545 | 100 | Plus |
| 4 | 1348131 | 4 | 560716..560822 | 226..332 | 535 | 100 | Plus |
| 4 | 1348131 | 4 | 560349..560412 | 52..115 | 320 | 100 | Plus |
| 4 | 1348131 | 4 | 560258..560300 | 9..51 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:08:58 has no hits.
UFO01665.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:03 Download gff for
UFO01665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pur-alpha-RA | 308..1138 | 1..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:48:47 Download gff for
UFO01665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pur-alpha-RC | 299..1129 | 1..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:33 Download gff for
UFO01665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pur-alpha-RA | 308..1138 | 1..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:33 Download gff for
UFO01665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 560252..560300 | 1..51 | 92 | -> | Plus |
| 4 | 560349..560411 | 52..114 | 100 | -> | Plus |
| 4 | 560471..560583 | 115..227 | 100 | -> | Plus |
| 4 | 560718..560820 | 228..330 | 100 | -> | Plus |
| 4 | 564361..564479 | 331..449 | 100 | -> | Plus |
| 4 | 564541..564662 | 450..571 | 100 | -> | Plus |
| 4 | 565410..565515 | 572..677 | 100 | -> | Plus |
| 4 | 565601..565756 | 678..833 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:03 Download gff for
UFO01665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 586036..586141 | 572..677 | 100 | -> | Plus |
| arm_4 | 586227..586382 | 678..833 | 98 | == | Plus |
| arm_4 | 580878..580926 | 1..51 | 92 | -> | Plus |
| arm_4 | 580975..581037 | 52..114 | 100 | -> | Plus |
| arm_4 | 581097..581209 | 115..227 | 100 | -> | Plus |
| arm_4 | 581344..581446 | 228..330 | 100 | -> | Plus |
| arm_4 | 584987..585105 | 331..449 | 100 | -> | Plus |
| arm_4 | 585167..585288 | 450..571 | 100 | -> | Plus |
