UFO01667.5prime Sequence
1112 bp (1021 high quality bases) assembled on 2008-10-17
> UFO01667.5prime
CAGTCGACATGGGAAATGCGAGTGGCAAGCGGGAGACGGATAATCTCTAC
AATTCGGAAGAGCTACGCATGCTGGAATCCGCGTACAAAAACGCCTCTGG
CGGAGCACTTGAGAAGTTGACCCAAGACAGATTGGTGGAAACTTGGTCGC
AAACCATCGAAAGATCCCTGGCCGAAAGTACGGCTCAGTATCTATTTACG
CCCACGAAGCCAGGTCAGCAATGTGTCAACCTTCAGCTGAAGAAATTTGG
AGAGCCCTACTACATCATGGAACGCGGTACTATTGACCAGAAAATGCAAA
TGCTCCTGGGCTCAATGGAGAGAAGTGGAAATGACACCTTCAACAGCAAG
CAATTGGAGCAATATATCTACTCGGTGATCAAGAGCTACGTGCACTTGGA
AAGTACAGCGAAAAACTCTGGCATCAAGGAGTGGCACGATCTTGGCTTTA
ACACCACGGAAAGGTCCGCCGCCACATTTGCCAAGGGCCTTATGAGAAAT
CTGGGCAAGGAGCTAGAGCACACTATGCCCAACGATGCCCTGGAACGTTG
GTTACACGTCACTCCGCAGTTTTTGCAGATTTGGCGCGAGGTCTTTAGCC
AGCTGTATTGTCGCCATGGTGGCAGCAAACGCAACATAATCAAGGAAATG
GAAATTCCAATTCTGCCAGCACTGTGTGATGCTCCGCAAAATAGTCATTA
TCGCCCTATCATCGAACTACCTCACGTCCTGTATATCAATGCTCAGCTGC
CCCGCGAACATCGGCACAAATGGCGCTTTCTATTCTCATCGAAAATCAAC
GGGGAAAGCTTCTCGACGATGTTGGGAAAAGTGCTGGACAAAGGACCAAC
GCTGTTCTTTATTGAGGACGAGGATCAATATATATTTGGCGGCTACGCGT
CCGAAACGTGGTCCGTGAAACCGCAATTTGGAGGCGATGACAGCTCATTG
CTCTACACTTAGGCCTGCCATGGGGTGCTTTTCGGCCCCACTTATAACAT
CACTATCAGTATTTGAATTTGATCAGCAGACTATGCCGATGACTGGCCAT
GGGCGGTCAGTTGATTTTGGGCTTGATGACCGCCATTCGGCGAATGGACA
CGTGAAGTGCAC
UFO01667.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5149-RA | 1898 | CG5149-RA | 151..1218 | 9..1068 | 5065 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7385867..7386182 | 678..363 | 1580 | 100 | Minus |
| 2L | 23513712 | 2L | 7385439..7385805 | 1039..678 | 1560 | 97.5 | Minus |
| 2L | 23513712 | 2L | 7386424..7386649 | 362..137 | 1130 | 100 | Minus |
| 2L | 23513712 | 2L | 7387974..7388103 | 138..9 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:32:50 has no hits.
UFO01667.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:27 Download gff for
UFO01667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5149-RA | 145..1221 | 1..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:48:49 Download gff for
UFO01667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5149-RB | 140..1216 | 1..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:49 Download gff for
UFO01667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5149-RA | 145..1221 | 1..1071 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:49 Download gff for
UFO01667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7385431..7385804 | 679..1045 | 97 | <- | Minus |
| 2L | 7385867..7386182 | 363..678 | 100 | <- | Minus |
| 2L | 7386424..7386648 | 138..362 | 100 | <- | Minus |
| 2L | 7387975..7388108 | 1..137 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:27 Download gff for
UFO01667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7385431..7385804 | 679..1045 | 97 | <- | Minus |
| arm_2L | 7385867..7386182 | 363..678 | 100 | <- | Minus |
| arm_2L | 7386424..7386648 | 138..362 | 100 | <- | Minus |
| arm_2L | 7387975..7388108 | 1..137 | 97 | | Minus |
