UFO01669.5prime Sequence
1112 bp (1002 high quality bases) assembled on 2008-10-17
> UFO01669.5prime
CAGTCGACATGATGTGCAGTAACAATATATCTGACTACAAACTGCTAGAA
ATACTTAAAAATGGCATGATTGGAACGGTTTACAAAGCAGAAGATATAAA
CAACAAATGCTTGGCTGTTAAAAAAGTTTCTATGGATCAGCCAATGGAAA
AGCTTACACTATTGTTTAACGAAGTTTTAACTGTTCGTCGGCTTCAACAT
AGAAATATAAACACTATCGTCAGTTGTTTTTTGTACAAGCAGTATGTTTA
TTTGACTTACAAGTTTATGTGTTTTGGAAATTGTGAAGTGCTGCTAAAAA
ACGTGTATACTTCTGGGTTTCCGGAAGTTGCAATAGCACTCATTTTAAAG
GATGTATTATCAGCACTTACTTATATTCACTCCGAGCATTATGTTCATGG
ATCAGTAAGGGCTAAGCACATACTCTTAAGTCCCAGAAAAGCAGTTCTAT
CAAATTTTAGTTACTGTCAAAGTTTTATTAGTCAAGGAGAAAAAAAAACG
TTTATATTTGGATCAACGGTTGGAATAGAAAAAGAGTTGTATTGGACAGC
ACCAGAAGTTTTATATCAAAACCTTTCTGGTTACACTGAAAAAATAGATA
TTTATTCCATCGGAATTACTTGTTGCGAAATGGCAAACGGGTTTCAACCC
TTTAAAGACACAGAATTAACATACATGTATATTGAAAAAGTGCGTGGAAG
TCTGCAGGTGCTACTGGATAAAAACAGCCTTTTGGAAAATCAAGGTTCCC
TATCCCTGGAGCACACAAATAAACGAATTGCTCGTGATGTAATTGTAAAC
AAATCATTTTCGGAAAACTTCCATCAATTTGTTGAACTATGCTTGAATAA
AATCCATTGTCTCGATGGGCAGCATCAAAATTAATGACACACTCGTTTCT
TAAGCAATGTCGGATACCAGTCTTTTGGACCAATTGAAAGACTTAGCAAA
ATGTCAAAGTTCAAAGAATGAACATGAAATATTCTCTGATGCTCGGGCAG
CCAACACCCTCCAACAAATGATACATTTGAATTGCAGCTTCTAAACATCG
TTGGCCGCGGGCCCAGTATGGGCTAATCATAATCTATCTAATCTAATCAA
CTAGCTAGGCAT
UFO01669.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stlk-RC | 1584 | CG40293-RC | 58..1083 | 9..1025 | 4865 | 98.7 | Plus |
| Stlk-RA | 1878 | CG40293-RA | 58..1083 | 9..1025 | 4865 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4560356..4560791 | 311..746 | 2165 | 99.8 | Plus |
| 2R | 25286936 | 2R | 4546748..4547055 | 9..316 | 1540 | 100 | Plus |
| 2R | 25286936 | 2R | 4562843..4563071 | 743..965 | 935 | 96.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:26:46 has no hits.
UFO01669.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:39 Download gff for
UFO01669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stlk-RA | 58..1083 | 9..1025 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:49:01 Download gff for
UFO01669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stlk-RA | 29..1054 | 9..1025 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:40 Download gff for
UFO01669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stlk-RA | 58..1083 | 9..1025 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:40 Download gff for
UFO01669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4546748..4547054 | 9..315 | 100 | -> | Plus |
| 2R | 4560361..4560789 | 316..744 | 100 | -> | Plus |
| 2R | 4562845..4563081 | 745..973 | 96 | -> | Plus |
| 2R | 4564434..4564457 | 974..997 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:39 Download gff for
UFO01669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 434253..434559 | 9..315 | 100 | -> | Plus |
| arm_2R | 447866..448294 | 316..744 | 100 | -> | Plus |
| arm_2R | 450350..450586 | 745..973 | 96 | -> | Plus |
| arm_2R | 451939..451962 | 974..997 | 100 | == | Plus |
