UFO01671.5prime Sequence
1077 bp (977 high quality bases) assembled on 2008-10-17
> UFO01671.5prime
CAGTCGACATGCAGAGACTGCAATTCGCTCTGCTAGCGTCGCTGCTCCTG
CTGGTGCTGCTTCTTCCGGGGATTAGGAGCACTCCCATCGACCAGGACGT
CGACATTGTTCACTATCAGCCGGAGCAAGTGCATCTGTCCTTTGGAGACA
ATCTTCGTGATATTGTGGTGACATGGTCGACTCGAAGTTCCCCCAACGCC
TCGGTGGTTAAATTCTCGCGGAACTATCTAAAAGACGAGCCGATAATGGT
GAACGGCACCTGGCAGCGATTCGTCGATGGTGGAAAGAAGGCTCGCACTC
AGTACATACACAATGTGGAACTGAAGGATCTGGAGCCGGACACGCGGTAC
GAGTACAGCTGCGGCAGTCCGCTCGGTTGGTCGGCGGTGTTCAATTTCAA
GACGCCACCGGCGGGTGAGAAGTGGTCGCCCTCGTTGGCCATTTTCGGTG
ACATGGGCAACGAGAATGCCCAGTCGATGGGCCGACTACAGCAGGACACT
GAGCGAGGCATGTACGATGCCATCATCCATGTGGGTGACTTTGCCTACGA
CATGGACACCTCCAACGCTGCCGTGGGTGATGCATTCATGCGCCAGATCG
AGTCGGTGGCTGCCTATGTGCCCTACATGGTTTGTCCGGGCAATCACGAG
GAGAAGTACAACTTCTCCAACTATCGCGCCCGCTTCAATATGCCCGGCGA
AACGGACAGCTTGTGGTACAGCTTCAACTTGGGACCCGTGCACTTTGTCT
CCTTCTCCACGGAGGTCTACTACTTCCTCAGCTATGGCTTCAAGTTGCTG
ACCAAGCAATTCGAGTGGCTGGAACGTGACCTGACCGAGGCCAATCTGCC
CGAGAATCGGGCCAAACGTCCGTGGATCATCACCTACGGTCATCGACCGA
TGTACTGCAGCGACGACAGGAGTACGATTGCAATAGCCAACTGGAGACGT
ACATTCGCCAGGGTCTGCCCATGCTCAGTGCTCGCTGAGATCTGTCTACA
GCACGCGTCGACTGAGATCTTTGCGCATGAACACTTCTACACTCGCCTGT
ACATCTACGACTACAAGTGTACCATGG
UFO01671.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1637-RC | 1708 | CG1637-RC | 246..1330 | 9..1077 | 4985 | 98.2 | Plus |
| CG1637-RD | 2199 | CG1637-RD | 693..1186 | 423..916 | 1000 | 80.4 | Plus |
| CG1637-RB | 2196 | CG1637-RB | 690..1183 | 423..916 | 1000 | 80.4 | Plus |
| CG1637-RD | 2199 | CG1637-RD | 246..384 | 9..147 | 695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10871529..10872045 | 658..142 | 2570 | 99.8 | Minus |
| X | 23542271 | X | 10871146..10871465 | 977..659 | 1535 | 99.4 | Minus |
| X | 23542271 | X | 10877415..10877553 | 147..9 | 695 | 100 | Minus |
| X | 23542271 | X | 10875242..10875476 | 657..423 | 560 | 82.6 | Minus |
| X | 23542271 | X | 10874913..10875170 | 916..659 | 450 | 78.3 | Minus |
| X | 23542271 | X | 10871062..10871098 | 1050..1014 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:17:34 has no hits.
UFO01671.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:45 Download gff for
UFO01671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-RC | 238..1330 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:48:42 Download gff for
UFO01671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-RC | 247..1339 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:35 Download gff for
UFO01671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-RC | 238..1330 | 1..1077 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:35 Download gff for
UFO01671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10871031..10871465 | 659..1077 | 95 | <- | Minus |
| X | 10871529..10872039 | 148..658 | 100 | <- | Minus |
| X | 10877415..10877561 | 1..147 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:45 Download gff for
UFO01671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10765064..10765498 | 659..1077 | 95 | <- | Minus |
| arm_X | 10765562..10766072 | 148..658 | 100 | <- | Minus |
| arm_X | 10771448..10771594 | 1..147 | 97 | | Minus |
