UFO01673.5prime Sequence
1058 bp (930 high quality bases) assembled on 2008-10-17
> UFO01673.5prime
CAGTCGACATGTTGGACGTGATCCAACCCAGCAGCAACCTCCCGACCAGC
GAAAGCACCGATATTGTGGTGGTCCGAGCCAGACCAAAGAAGGTGTTCAA
GCCAAAGGCGCGCATCAATCGGATTCCCCAGGAGCTGCTCGATGATCCAC
TGCTGCAGCAGGCCATCGACCGTCTGCCCTCGAACTACAACTTCGAGATG
CACAAGACGATTTGGCGCATACGGGAGATGAAGGCCAAGCGTGTGGCCCT
GCAACTGCCGGAGGGCCTGCTGATGTACGCCATGGTTATCAGCGACATTG
TGGAGCGATTCACCAGCGCAGATACTGTGATAATGGGCGATGTGACTTAC
GGAGCTTGCTGCGTGGACGACTACACTGCCAAGGCGTTGGGAGCTGATCT
GCTGGTCCACTACGGCCACAGCTGCCTCATTCCCGTAGATCAGACGTGTG
GCATCAAGGTGCTGTACATTTTTGTAGACATCAAAATCGATCCGCTGCAC
TTCCTGGACTCTGTAAAGCTGAACTTCCGCCCGGAAGTGGGCCAAATAGC
TTTAGTAAGCACAATACAGTTCGTGACAACGCTGCAAGCTGCATCTACTG
AGCTAAAGGCAGCCGGCTATGATGTGATAGTACCACAGGCCAAGCCACTT
AGTCCTGGAGAGATTCTTGGGTGCACTTCGCCTCAGCTGCCAGAGACAAC
GAAGATGATAATATATTTGGGTGACGGGCGTTTTCATCTAGAATCCGCAA
TGATAGCAAACCCGTTGCTAAAGGCTTACAAGTACGATCCCTATGAAAAG
AAGTTCACCACAGAGCAGTACGATCACTCGGCGATGCAGATCTGCGCCTG
GACGCTGTTCAGCGGGCTAAGACGCGCGCGCATTGGCATCATACTTGACA
CTCGGAGACAGCAGTCAGAGTGCATCGGTTTTGAGAGCGACTCATGCAAG
GTATGAACTACACATATGCTGTCGAGATCTCCCACGAAATGGCTCTTTCG
CCGACTCGACGCCTTTGTGCGAATTGCTTGTCCGCGACTTTCAATCGACT
GGGGATCG
UFO01673.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11652-RC | 1720 | CG11652-RC | 88..1164 | 8..1057 | 4695 | 97.2 | Plus |
| CG11652-RB | 1784 | CG11652-RB | 152..1228 | 8..1057 | 4695 | 97.2 | Plus |
| CG11652-RA | 1725 | CG11652-RA | 93..1169 | 8..1057 | 4695 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11694809..11695575 | 774..8 | 3835 | 100 | Minus |
| 3L | 28110227 | 3L | 11694619..11694747 | 897..772 | 480 | 96.9 | Minus |
| 3L | 28110227 | 3L | 11694435..11694497 | 1057..996 | 235 | 95.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:27 has no hits.
UFO01673.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:20 Download gff for
UFO01673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11652-RA | 86..1027 | 1..932 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:49:05 Download gff for
UFO01673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11652-RB | 91..1031 | 1..932 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:00 Download gff for
UFO01673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11652-RA | 86..1027 | 1..932 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:00 Download gff for
UFO01673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11694810..11695581 | 1..773 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:20 Download gff for
UFO01673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11687910..11688681 | 1..773 | 99 | | Minus |
