UFO01674.5prime Sequence
759 bp (652 high quality bases) assembled on 2008-10-17
> UFO01674.5prime
CAGTCGACATGGAGAAGAGAATAGAACTGGAAAGACGCGCACGCAAAGTA
AATCAGATCACAGAGCTGAATCTGGACAACTGCCGTAGTACAAGCATCGT
TGGCCTTACAGATGAATACACAGCCTTGGAATCGCTTAGCTTGATCAACG
TGGGTCTCACCACACTGAAAGGTTTCCCCAAGCTGCCCAATTTAAAGAAG
CTCGAACTGTCCGACAATCGGATTTCGAGTGGCCTCAACTATCTGACCAC
TAGCCCCAAACTGCAATATCTCAACTTGTCTGGCAACAAGATAAAGGATC
TGGAAACCCTGAAGCCCCTGGAGGAGTTTAAAAATCTGGTTGTTCTGGAT
TTGTTTAATAACGACGCTACTCAAGTGGATAATTACCGCGAGAAGATCTT
CAAGATGTTGCCATCGTTAAATTTCCTAGATGGATTTGATTGCAACGACG
AGGAGGTGCAATCTGATGGCGATGATGATGATGAGGTCAACGGCAACGAT
TCCGACGAAGTGGGAGTTTCCGACGAAGATGACGACAGCGATGATAGCGA
CGAAGAGGCGAATGGTGAAGTGTCCCTGTCGGAGTGTACAATGACGATTT
GGAAGAGGATAACTCTGATTGGGAAGGCGAAGACGAGCTGGCGAGGAGAC
GAGAGAGATCGATATGATGATGCCGATGGTGATGCAACGATCGCTGCATC
ATGATGCAGACAAGATGCAAGACGACGTCCAGTCAGCAAAAAGAAGCTGA
TGTGCAGCT
UFO01674.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mapmodulin-RA | 2073 | CG5784-RA | 397..1101 | 9..701 | 3245 | 98.3 | Plus |
| Mapmodulin-RB | 2145 | CG5784-RB | 328..1032 | 9..701 | 3245 | 98.3 | Plus |
| Mapmodulin-RD | 2379 | CG5784-RD | 397..904 | 9..516 | 2540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17868432..17868810 | 433..55 | 1895 | 100 | Minus |
| 2R | 25286936 | 2R | 17867426..17867561 | 648..515 | 580 | 98.5 | Minus |
| 2R | 25286936 | 2R | 17868287..17868370 | 516..433 | 420 | 100 | Minus |
| 2R | 25286936 | 2R | 17871329..17871376 | 56..9 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:31 has no hits.
UFO01674.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:21 Download gff for
UFO01674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mapmodulin-RB | 323..1040 | 1..707 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:49:06 Download gff for
UFO01674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mapmodulin-RA | 387..1104 | 1..707 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:01 Download gff for
UFO01674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mapmodulin-RB | 323..1040 | 1..707 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:01 Download gff for
UFO01674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17867355..17867559 | 517..707 | 93 | <- | Minus |
| 2R | 17868287..17868369 | 434..516 | 100 | <- | Minus |
| 2R | 17868432..17868808 | 57..433 | 100 | <- | Minus |
| 2R | 17871329..17871381 | 1..56 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:21 Download gff for
UFO01674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13754860..13755064 | 517..707 | 93 | <- | Minus |
| arm_2R | 13755792..13755874 | 434..516 | 100 | <- | Minus |
| arm_2R | 13755937..13756313 | 57..433 | 100 | <- | Minus |
| arm_2R | 13758834..13758886 | 1..56 | 92 | | Minus |
