UFO01675.5prime Sequence
1128 bp (1011 high quality bases) assembled on 2008-10-17
> UFO01675.5prime
CAGTCGACATGAATGGCTATACAAATAATTGTATATCGATATGTGCAATT
TTATTAATAGGCGTATCTTCACCCGCTCCTCAGCAGAACATTAACGCACA
GAAAAACATTGAGGAAATATTTAATACTAATAGTAATCTTTCAGCGCAAA
AAGAATCCGGAATCGGATTAGTGATTACCCCCGATCCTATGGAAACTATA
AGTCAACAGTCAAATTTTACTTCAACTAGTGGCAAAACTGCAACTTGTAA
TTGCGTCCCATATTATAAATGTGATCCATCAACAAAGAGTTTCACTGAAG
ATGGCTCTTTTGACGGATTTGGTGTTATAGATATTCGATTTAACGACGAT
GATCCGATATGCCCGGCATCTGTAGACGTATGTTGTGATGCTAATAGGAC
GCTTAATAAGACGTTGAATCCGACACCCTTGGATCAAAGGCCAAACCAGC
CAAGAGGCTGTGGTGTTCGCAATACAGGTGGATTGGATTTTACTCTTTCC
GGAGTATCGCAAAATGAAGCGGGTTTTGGCGAGTTTCCATGGACGGTAGC
ATTATTGCATTCTGGAAATTTAAGCTATTTCTGTGCTGGATCTCTTATAC
ATAAACAGGTGGTTTTGACCGCTGCGCACTGTGTTGAGTCGCTTAGAACA
GGATCGTTTACTGTCCGAGCTGGAGAGTGGGATACACAAACAATGAAAGA
GCGTCTACCCTATCAAGAAAGATCGGTTCAAACTGTTATATTGCACCCAG
ATTATAACAGAAGAAGCATAGCTTATGATTTCGCACTTGTAATTCTAAGT
CAGCCGGTTACTTTGGATGATCACATTAATGTTATATGTTTACCTCAACA
AGATGATATTCCGCAGCCCGGTAACACATGTTTTCCACCGGCTGGGGAAA
AGATGCTTTTGGTTCTTTGGGCAATATAGCTCCTTATGAAACGTGTTCCA
TTGCCCATTGTGAGTTTACAGTGTCAGACCCGACTTAAGGCACTCGACTG
ACCAAGTTGCATGATAGTCATTCTATGCCCGGGTTGACAGCTGCATGATC
TGTCAGGGATGGCGGGTCATACTGTCTAGGAAATAACTGATCCGAATCAC
AAACTGTATGCTGGGATTCGAGTTAGTG
UFO01675.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40160-RH | 4869 | CG40160-RH | 85..1164 | 9..1066 | 4845 | 97.7 | Plus |
| CG40160-RG | 1478 | CG40160-RG | 121..1200 | 9..1066 | 4845 | 97.7 | Plus |
| CG40160-RF | 1422 | CG40160-RF | 65..1144 | 9..1066 | 4845 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 26224649..26225604 | 9..961 | 4630 | 99.7 | Plus |
| 2R | 25286936 | 2R | 3469245..3470199 | 961..12 | 3925 | 95.5 | Minus |
| 2R | 25286936 | 2R | 3334862..3335566 | 12..713 | 2945 | 95.2 | Plus |
| 2R | 25286936 | 2R | 3335571..3335790 | 745..961 | 905 | 97.3 | Plus |
| 3L | 28110227 | 3L | 26223678..26223757 | 847..924 | 230 | 88.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:12:34 has no hits.
UFO01675.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:58 Download gff for
UFO01675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40160-RF | 58..1079 | 1..1012 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:49:07 Download gff for
UFO01675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40160-RB | 86..1100 | 9..1012 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:24 Download gff for
UFO01675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40160-RF | 58..1079 | 1..1012 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:24 Download gff for
UFO01675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 26224649..26225663 | 9..1012 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:58 Download gff for
UFO01675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3LHet | 1571199..1572213 | 9..1012 | 98 | | Plus |
