UFO01676.5prime Sequence
1087 bp (995 high quality bases) assembled on 2008-10-17
> UFO01676.5prime
CAGTCGACATGGTGTTCAAGTGCCAGGAGGACAGTTTCCTGAAGGAGTTC
AAGACAAAAATCGTTAGCAGCGAGTTTGCCACCTTGGATTGGACAGATCC
CAGTGGAAAGGTGGAGAAACTCAAGGGCTTCAATGTGATCTGCGAGGACA
CGATACTATTTCCCGAGGGCGGTGGTCAGCCCTGCGATTACGGAACCTTA
GGCGGATTTCCAGTTAAGAATGTCCAGAGAAAAGGCTCTACGGCTGTACA
TTTTGTGGAATCCCCAACGAGTTTCGAGCAGGATGCCGAAGTCCTTCTGA
CACTAGACTACCAAAGAAGACTGGATCACATGCAACAGCACTCAGGACAG
CACCTGATCACCGCCCTGTTCGACAGGGAGTTCAAGTACGATACCACCTC
GTGGTCCCTGGGATCCACTGTCTCTTACATTCAATTAAGTACGCCTCATT
TGATAAGTCGCGAGTCATTGGACCTCATCGAACGTCAGGCCAACGATCTG
ATTCGCGAGGGCCGTGAAGTTACGGTGCTTCTGGTGGATCCCGAGGTGGC
GCAAGAGTTCCAGGATGCCAGAGCTCCCAGGGGATTGCCCAAGGATCACG
AGGGTCTGGCCAGGGTGGTGCGAATCGAGGGCATTGAGAGCAACATGTGC
TGCGGCACCCACGTCACGAATCTCTCTCAACTGCAGTGCATTAAGCTGCT
CTACGCCGAGAAGGTGAAGGCGAATGTTCTGGTGCACTTTGTCGTCGGCG
AGAGGGTGCTCGTAAAGCTTGGCGAGGTCTTTCAGCGCGAACAGCAGCTA
ACACAGGCTTTAAAAGGTGGACCCGGTCAGCACTTGTAGCTTGTCCAGAA
GCTACAGCAAAATGTGAAAGGCAGTCGAAAGTACTTCCAGCAGCTGCTTA
AACGTTACGCCACCGCGAAGCCGAGCGTCTCTGCGATTTGCCCAAAAAGG
ATCGTCCGAATATTTCTCTCCCCATCGACGCGATGGCATCGAGGTGAACT
CATCAACCATTCTGCGGCGGTCCGGAAGATCTCCACTCCCCTGTCGAAGC
GTTTTGCTGCAACATGCAGATCTGGTGCTGCGCGAAT
UFO01676.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10802-RA | 1472 | CG10802-RA | 81..1107 | 9..1028 | 4900 | 98.9 | Plus |
| CG10802-RB | 1400 | CG10802-RB | 458..1035 | 458..1028 | 2655 | 98.1 | Plus |
| CG10802-RB | 1400 | CG10802-RB | 81..457 | 9..385 | 1885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3483144..3483912 | 46..814 | 3845 | 100 | Plus |
| X | 23542271 | X | 3483970..3484157 | 815..1000 | 780 | 96.8 | Plus |
| X | 23542271 | X | 3483045..3483083 | 9..47 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:09:01 has no hits.
UFO01676.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:05 Download gff for
UFO01676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10802-RA | 81..1070 | 9..996 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:49:08 Download gff for
UFO01676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10802-RA | 77..1066 | 9..996 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:35 Download gff for
UFO01676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10802-RA | 81..1070 | 9..996 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:35 Download gff for
UFO01676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3483146..3483912 | 48..814 | 100 | -> | Plus |
| X | 3483970..3484153 | 815..996 | 97 | == | Plus |
| X | 3483045..3483083 | 9..47 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:05 Download gff for
UFO01676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3377078..3377116 | 9..47 | 100 | -> | Plus |
| arm_X | 3377179..3377945 | 48..814 | 100 | -> | Plus |
| arm_X | 3378003..3378186 | 815..996 | 97 | == | Plus |
