UFO01677.5prime Sequence
1057 bp (931 high quality bases) assembled on 2008-10-17
> UFO01677.5prime
CAGTCGACATGGGTAAGCCGAAGAAGGCCAACGTGGCAACGATTAAAAAT
GTGAATCTGGAGAAGCAGATCACCGAGGGCAGGGTGGCGAAAAACAAGAA
CAAGGATAAAGTCAAACTGCGGGCCGAGGAATCGGCGAACATCGATGCCA
GAAGTAGTCAAAAGATCCTGGCCGCGGCCAAGCTGCAGCAGTTGGAGCTG
GACGAAGAGAACTTTCCCAGTCTGGTGACCGTCAAGAAAGTCAACTTCAG
TTTGAATGATGGCCATGTCAAGGAGGATGAAGAGGTCAACGAGACTGACC
TCATGGCCGACCTGGACATGGACGAAGACGATGTGGCCGCGTTCGAGCGC
TTCCAGCAGCCAGCACAGGAGGGCAAGCGTACGTTGCACCTGTCCAAGAT
GATCATGCAGAAGATCCAGGAGAAGGAGGCCGACATACACACTAAGATCT
CTGACGAGGGCTCACTAAAGATCGAGGAAATCGACCCGAAAGTGAAGGAG
ATGTACGAGGGCGTGCGCGATGTGTTGAAACGCTATCGCAGTGGCAAGAT
CCCTAAGGCCTTCAAGATCATACCCAAGCTGCGCAATTGGGAGCAGATCT
TGTTCATCACTGAGCCCCATAATTGGAGCGCTGCCGCCATGTTCCAAGGC
ACCCGCATCTTCTGCTCGGTGCTGTCGCAGCAATGGCCCAGAGGTTCTAT
AACCTGGTGCTCCTGCCACGAGTTCGTGATGATCTCTGCGAATATAGAAG
CTCAATATGCATCTGTACAATGCACTGAAGAGGGCTCTCTTCAAGCCGGC
TGCCTTCATGAAGGGAATCATTCTGCCGCTGCTCGAGGGCGGCGATTGCA
CATTGCGCGAGGCCATCATTTTCGGCAGTGTGGTGCCCGCAGCTCTATTC
CCGTCTGCACTCCTCGCTGCTGCTGAGATCTGTGGAGATGCTATCGGAGC
TACTCATATCATCGTACTTTCTGGACAGCGATGCTCTGCCTTATCGCGTC
TGATGCCGCAGTCTTTCATTTTCTAGATCCGAGACGACAAGCGTGAGTTA
CAATGCT
UFO01677.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bys-RA | 1518 | CG1430-RA | 113..1178 | 9..1051 | 4715 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7902367..7903030 | 256..915 | 3120 | 99.4 | Plus |
| X | 23542271 | X | 7901992..7902120 | 9..137 | 645 | 100 | Plus |
| X | 23542271 | X | 7902184..7902302 | 137..255 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:50:53 has no hits.
UFO01677.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:26 Download gff for
UFO01677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bys-RA | 105..1185 | 1..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:49:09 Download gff for
UFO01677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bys-RA | 83..990 | 1..905 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:22 Download gff for
UFO01677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bys-RA | 105..1185 | 1..1057 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:22 Download gff for
UFO01677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7901984..7902120 | 1..137 | 97 | -> | Plus |
| X | 7902185..7902302 | 138..255 | 100 | -> | Plus |
| X | 7902367..7903159 | 256..1026 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:26 Download gff for
UFO01677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7796218..7796335 | 138..255 | 100 | -> | Plus |
| arm_X | 7796017..7796153 | 1..137 | 97 | -> | Plus |
| arm_X | 7796400..7797192 | 256..1026 | 96 | -> | Plus |
