UFO01678.5prime Sequence
168 bp (-45 high quality bases) assembled on 2008-10-17
> UFO01678.5prime
CAGTCGACATGTCGGAGGACCAAGGCAAAGACTACACACTGGAGTCCGAC
TCCGAGCTGCGCTTTGAAATCGAGCAGAAGGATGCCAAAGTGCTGGTGTC
CCTGGTCAGTGGATTTGCGGAGCTGTTCGGCACGGAGCTGGTGAAGAAAA
AGCGTACAGTTCGCGTGG
UFO01678.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cbc-RA | 1654 | CG5970-RA | 107..270 | 8..168 | 745 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13485192..13485285 | 101..8 | 470 | 100 | Minus |
| 2R | 25286936 | 2R | 13485072..13485123 | 153..102 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:32:35 has no hits.
UFO01678.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:21 Download gff for
UFO01678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbc-RA | 103..270 | 1..168 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:49:21 Download gff for
UFO01678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5970-RA | 108..275 | 1..168 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:00 Download gff for
UFO01678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbc-RA | 103..270 | 1..168 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:00 Download gff for
UFO01678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13485054..13485123 | 102..168 | 95 | <- | Minus |
| 2R | 13485192..13485289 | 1..101 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:21 Download gff for
UFO01678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9372559..9372628 | 102..168 | 95 | <- | Minus |
| arm_2R | 9372697..9372794 | 1..101 | 97 | | Minus |
