UFO01679.5prime Sequence
1101 bp (991 high quality bases) assembled on 2008-10-17
> UFO01679.5prime
CAGTCGACATGTTGAAATCCAGTCAAGATCGCAAGCTAAAGCACCTTTTC
GATGGCGGTGATTGGAATGTATACGCTCCGAACATCCTAAATCTCGGAGT
GGGTGCTCCAGGACCAGATATCCTGACCGCCAACTGTGATAGCTTCCGGA
CGGCCACAGATCATTGTCTGGAACGCGAAAAGCGGGAAAACCAGTCGCTA
ATTTTCCAATATGGACCAACAAGTGGAACATTCGAGGTGCGACGCGAGAT
CTCCACCTATTTCACCGAAATGTTCAAAAGTCCCGTCAATTGTGAGGATT
TGATAATAACCACAGGAGCATCCCATGGCCTTCACATACTTTTGTCCACA
ATGTTGGACTTTGAGGGTTTCGTATTCGTCGATGAGTACACCTATATGAT
TGCTTTAGATAGTATAAAACACTTTAGCACTGTGACCATAGTTCCCGTAA
AGCTCAACGATGATGGCGTGGATCTGAAGGATCTTGAAGAGAAGGTATCA
AAACGACGATTTCAATCGAAGAAGAAAGAGTTCTGGGGAATCTACTATAC
GATACCAACGTATCATAATCCCACGGGGATTCTATTCTCGCCGGAGGTCT
GTCGTGGAATTGTGCAACTTGCTAGGAATTATGATTTCCTTGTCGTCTGC
GATGATGTTTATAATATTCTCAACTATGGCGAAACGCCCACACACAGCCG
TCTGTTGTCCTATGATGACAGAAATGATGCCAACTTCGCAGACATGTTAT
CTCCAATGGAAGTTTCTCCAAGATTCTGGGACCGGGAGTTCGCCTGGGTT
GGCTTGAGGTTCCTCCGCGCCTGAAACCAATTTTAGATGGAAGTGGTTTT
GCCACTAGTGGTGGATGCTTCAACAACTACACATCAGGATTGTGGGCAGT
CTATTTGAGCTTAAGCTAGCCCAGAAGCAAATTTCTGGGTCCTATGAAGC
TTATAAGGAGCGCATGCTGGCCACCACGCAAGTGCTTCCAGAATGAGTTG
CCGACTGCCTGCAAGTGGTCAGCCCCCACGGGCGGATACTTCATTGGGTG
CCGATACCGGATCGAATGGACTGCCGGGGATTCTCAGTACTGGCATGGAA
A
UFO01679.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6321-RA | 1594 | CG6321-RA | 94..1189 | 7..1099 | 5150 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11059864..11060350 | 1078..594 | 2000 | 95.9 | Minus |
| 3L | 28110227 | 3L | 11060420..11060722 | 594..292 | 1515 | 100 | Minus |
| 3L | 28110227 | 3L | 11060967..11061131 | 171..7 | 825 | 100 | Minus |
| 3L | 28110227 | 3L | 11060786..11060908 | 292..170 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:00:22 has no hits.
UFO01679.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:26 Download gff for
UFO01679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6321-RA | 88..1188 | 1..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:49:24 Download gff for
UFO01679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6321-RA | 83..1183 | 1..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:54 Download gff for
UFO01679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6321-RA | 88..1188 | 1..1098 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:54 Download gff for
UFO01679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11059843..11060349 | 595..1098 | 96 | <- | Minus |
| 3L | 11060420..11060721 | 293..594 | 100 | <- | Minus |
| 3L | 11060786..11060907 | 171..292 | 100 | <- | Minus |
| 3L | 11060968..11061137 | 1..170 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:26 Download gff for
UFO01679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11052943..11053449 | 595..1098 | 96 | <- | Minus |
| arm_3L | 11053520..11053821 | 293..594 | 100 | <- | Minus |
| arm_3L | 11053886..11054007 | 171..292 | 100 | <- | Minus |
| arm_3L | 11054068..11054237 | 1..170 | 97 | | Minus |
