UFO01680.5prime Sequence
1082 bp (998 high quality bases) assembled on 2008-10-17
> UFO01680.5prime
CAGTCGACATGGCCTTGATAAAACTAGCAAGGCAACTGGGCCTGATCGAT
ACCATATACGTCGACGGAGCTCGCCCAGATCCAAATAACGATCCCGAGGA
GTCGTTCAACGAGGACGAAGTCACAGAGGCCAACTCAGTGCCCGCCAAAA
GCAAGAAGTCAAGGAAGTCCAAGCGTCTAGCCATGCAACCCTACTCATAT
GTGATTGCCGTGGACTTTGAGGCAACCTGCTGGGAAAAGCAGGCTCCGCC
AGAGTGGCGAGAAGCGGAGATAATTGAATTCCCAGCAGTGCTTGTTAACC
TTAAGACAGGAAAGATCGAGGCGGAATTCCACCAGTACATCCTTCCCTTC
GAGTCGCCGCGCTTGAGCGCCTACTGCACGGAGCTGACGGGCATCCAGCA
GAAGACTGTGGACAGCGGAATGCCGCTGCGGACGGCGATCGTGATGTTTA
ACGAATGGCTGCGCAATGAGATGCGAGCCCGCAACCTTACCTTGCCCAAG
ATGAACAAGTCAAACATACTGGGCAACTGTGCATTCGTCACCTGGACGGA
CTGGGACTTCGGCATCTGCTTGGCGAAGGAGTGCAGCCGCAAAGGGATAC
GCAAGCCGGCCTACTTTAATCAGTGGATCGACGTGCGGGCCATTTATCGG
TCGTGGTACAAGTACCGTCCGTGCAACTTCACGGATGCCCTGTCGCACGT
GGGTCTGGCATTCGAGGGCAAGGCCCACTCGGGGATCGACGATGCCAAGA
ATCTGGGCGCACTCATGTGCAAGATGGTGCGCGACGGGGCGCTATTCTCG
ATCACCAAAGATCTGACGCCATATCAGCAGCTTAATCCCAGGTTCGTGTT
GGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAGTGGTCA
TAATCATAATCATAATCATATCATAATCACACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTTTCACCAATAAAAACGCCCGGCGGCCACCG
AGCGTTCTGAACAATTCAGAATGGAGTTCTGAGGTCATTACTGGATCTAT
CCACAGGAGTCCAGCGAGCTCGATTCAATAAG
UFO01680.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snp-RD | 1899 | CG44248-RD | 610..1452 | 9..851 | 4215 | 100 | Plus |
| Snp-RF | 1419 | CG44248-RF | 151..972 | 30..851 | 4110 | 100 | Plus |
| Snp-RG | 1667 | CG44248-RG | 401..1220 | 32..851 | 4100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22068735..22069310 | 276..851 | 2880 | 100 | Plus |
| 2R | 25286936 | 2R | 22068425..22068671 | 30..276 | 1235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:17:48 has no hits.
UFO01680.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:48 Download gff for
UFO01680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snp-RD | 605..1458 | 1..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:49:26 Download gff for
UFO01680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42257-RD | 602..1455 | 1..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:41 Download gff for
UFO01680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snp-RD | 605..1458 | 1..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:41 Download gff for
UFO01680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22068427..22068671 | 32..276 | 100 | -> | Plus |
| 2R | 22068736..22069316 | 277..859 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:48 Download gff for
UFO01680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17955932..17956176 | 32..276 | 100 | -> | Plus |
| arm_2R | 17956241..17956821 | 277..859 | 99 | == | Plus |
