Clone UFO01682 Report

Search the DGRC for UFO01682

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:16
Well:82
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcripttub-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO01682.5prime Sequence

461 bp (369 high quality bases) assembled on 2008-10-17

> UFO01682.5prime
CAGTCGACATGGCGTATGGCTGGAACGGATGCGGAATGGGCGTGCAGGTG
AACGGAAGCAACGGCGCCATAGGTTTATCCTCGAAGTATTCTCGCAACAC
GGAGCTGCGACGCGTTGAGGACAATGACATTTACCGGCTTGCCAAAATAC
TAGATGAGAACTCATGCTGGCGCAAATTGATGTCGATCATACCCAAGGGC
ATGGATGTGCAGGCCTGCAGCGGAGCCGGATGCTTGAATTTTCCGGCGGA
AATCAAAAAGGGATTTAAGTACACTGCGCAGGACGTGTTCCAGATTGACG
AGGCTGCAAACCGACTACCGCCGGACCAAAGCAAGTCGCAGATGATGATC
GACGAGTGGAAGACCTCTGGCAAGCTCAACGAGCGGCCCACGGTTGGGGT
ATTGCTCCAACCTTCTGGTGCAGGCAGAGCTCCTTCAGTGGCGCAGAACT
TTTTGCAATAG

UFO01682.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
tub-RC 2006 CG10520-RC 188..625 8..447 2120 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4387929..4388352 8..432 2075 99.8 Plus
Blast to na_te.dros performed on 2014-11-28 23:30:34 has no hits.

UFO01682.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:26 Download gff for UFO01682.5prime
Subject Subject Range Query Range Percent Splice Strand
tub-RC 185..632 1..455 97   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:49:03 Download gff for UFO01682.5prime
Subject Subject Range Query Range Percent Splice Strand
tub-RB 518..965 1..455 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:16 Download gff for UFO01682.5prime
Subject Subject Range Query Range Percent Splice Strand
tub-RC 185..632 1..455 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:16 Download gff for UFO01682.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4387926..4388366 1..449 97 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:26 Download gff for UFO01682.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 213648..214088 1..449 97 <- Plus