UFO01683.5prime Sequence
1078 bp (989 high quality bases) assembled on 2008-10-17
> UFO01683.5prime
CAGTCGACATGAGTAAAAAACCGCATTCCATAAAAGTTCCCACCCAATAC
AGGGCGACTGCCAAGATTTTGAAGGCGGCACTGGAGCAGCAGAAGTGCAT
CAAGACCCTAATATTTGCAGAGAAGCATGCCCGTACACGCTCTTTGCATA
CGGTTCTGAAAAAATTTAGCGAAAATCGTGTGGCACTGGAAAAGGCCATC
GAAGAGACAGGACTGCTCAGGGACAATCCCAGTTTTGATCCCAGTTTGGC
CAAGATTCTAGTCACCGAACTGCTGTTTGGCAGGAAGGAGCTGAACGGCG
AAAGCAAACCCGTGCAAACGGTGCGAAGTTACAAGGATCGACTGCTAAAT
TCCATCAGAGATTTCGGTGTCCAGCGAAAAGAACCCAATCCTCGATATGT
GCGCATCAACACAAATCTATACAGCTTGGCGGAGGCCTTGGACTACCTGC
ATAAAAGCGACTGGCGGCGCAAGGAGCTGCCTGCGGACGCCAGCTATGCG
GATTTTCTGACTGCCATCAAATCGCTGGCGGAGAACGAGTTCATGACCGA
TCTGCACGTTGAGGGTGTGCTCATTTTTCCTGCCAAGTGGTCCAACTACT
GGGTCCGCCATCCGTTGGTGCACAGCAAGAGGTTTATACTGCAGAACAAG
GCCACCTGTTTGGCCGCCGAACTACTTGCTCCGCCGTCTGGGGCCACTGT
GCTGGATATGTGCGCAGCTCCCGGTATGAAGACAGTGCACATATGCAATG
TGATGCAGAACAAGGGATGCATCTACTCCGTGGAGCAGACCACGTACGCT
ACAATACGCTGTGCGAAATAACAAAGGATGCTGGTTGCGATATTGTAAAC
CCATTTTGGGAGACGCCTTGAACCTAACACCCGAACGCTTTCCGGACGTA
GAGTACATCCTGTGGACCCTAGTGCTCTGGCAGCGGAATGCAAACCGCAT
GACGTGTGCGACGAGCCGAGAGACAGCGGCTGCAAGCTGCAGTTGCAATA
GATCTGTCGCACGCGATGGGCGCTTTCGACGTCAACGCATGCTACTGCTG
TTCGCTGTGAAGAAGAAAACGAACAGTG
UFO01683.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42358-RA | 1498 | CG42358-RA | 63..1160 | 9..1076 | 4780 | 97.1 | Plus |
| CG42359-RA | 966 | CG5558-RB | 63..435 | 9..381 | 1865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19160727..19161226 | 877..380 | 2400 | 99.6 | Minus |
| 3R | 32079331 | 3R | 19161790..19162039 | 381..132 | 1250 | 100 | Minus |
| 3R | 32079331 | 3R | 19162116..19162238 | 131..9 | 615 | 100 | Minus |
| 3R | 32079331 | 3R | 19160568..19160663 | 969..878 | 280 | 95.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:32:26 has no hits.
UFO01683.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:18 Download gff for
UFO01683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42358-RA | 51..1117 | 1..1040 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:49:04 Download gff for
UFO01683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5558-RA | 29..1095 | 1..1040 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:56 Download gff for
UFO01683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42358-RA | 51..1117 | 1..1040 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:56 Download gff for
UFO01683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19160727..19161224 | 382..877 | 99 | <- | Minus |
| 3R | 19161790..19162039 | 132..381 | 100 | <- | Minus |
| 3R | 19162116..19162243 | 1..131 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:18 Download gff for
UFO01683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14986449..14986946 | 382..877 | 99 | <- | Minus |
| arm_3R | 14987512..14987761 | 132..381 | 100 | <- | Minus |
| arm_3R | 14987838..14987965 | 1..131 | 96 | | Minus |
