UFO01685.5prime Sequence
1012 bp (890 high quality bases) assembled on 2008-10-17
> UFO01685.5prime
CAGTCGACATGTCCCATCCGTCTGACCATGTGCTGCGTCCCAAGGAAAAT
GCTCCGCACAGAATGCCAGAAAAATCAGCTGCAGTGCACAATATGCAAAA
GAACTTGCTATTGGGAAAGAAGCCCAACAGCGAGAATATGGCTCCAGCTA
GCAAACCCTTGCCAGGATCCTCTGGCGCTTTGATCAGGAAGCCAGGCCTA
GGAGGCTCCAATTCCATAGCTTCCTCCGAAGGAAACAACTTCCAAAAACC
CATGGTGCCGTCCGTGAAGAAGACCACATCAGAGTTTGCTGCTCCGGCTC
CAGTAGCACCTATCAAGAAGCCTGAGTCACTTTCCAAGCAGAAACCCACT
GCTGCGAGCTCTGAATCCTCCAAGGAACTGGGTGCGGCCAGCAGCTCCGC
TGAAAAAGAGAAAACCAAGACTGAAACCCAGCCCCAGAAGCCGAAGAAGA
CCTGGGAGCTCAACAACTTTGATATTGGTCGCCTGCTGGGACGGGGCAAG
TTTGGCAACGTTTATTTGGCGCGGGAAAAGGAATCCCAGTTCGTGGTGGC
CCTAAAAGTGCTCTTTAAGCGCCAGATTGGCGAGTCCAATGTGGAGCACC
AGGTGCGTCGTGAGATCGAGATACAATCGCACCTACGTCATCCGCATATC
CTGCGTCTGTATGCCTACTTTCACGACGACGTGCGCATATATCTGATCTT
GGAGTATGCGCCACAAGGAACGCTTTTCAACGCCTTGCAGCACAGCCGAT
GAAACGTTTCGATGAACGCCAGTCGGCCACCTATATTCAGCGTTGTGCTC
GGCGCTGCTCTATCTGCATGAGCGGGACATCATACACAGGACATCAAGCC
GAGAACTTGCTGCTCGGGCACAGGCGTCTGAGATCGCGACTCGTGTCGTG
CACGAGCGACTCATGCGCATGACACTGTGCGCACTGTCGACTACTGCCAC
CGGAATGATCAGCAGGCGGCAACGAAAACGTGATCTTATGAACTGGGGTG
CCTGCTTGACTG
UFO01685.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aurA-RA | 1577 | CG3068-RA | 168..1134 | 8..955 | 4365 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11963832..11964285 | 423..872 | 2070 | 99.1 | Plus |
| 3R | 32079331 | 3R | 11963468..11963770 | 121..423 | 1515 | 100 | Plus |
| 3R | 32079331 | 3R | 11963291..11963405 | 8..122 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:15:23 has no hits.
UFO01685.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:01 Download gff for
UFO01685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aur-RA | 159..1143 | 1..962 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:49:27 Download gff for
UFO01685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aur-RA | 153..1137 | 1..962 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:20 Download gff for
UFO01685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aurA-RA | 159..1143 | 1..962 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:20 Download gff for
UFO01685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11963282..11963405 | 1..122 | 96 | -> | Plus |
| 3R | 11963470..11963770 | 123..423 | 100 | -> | Plus |
| 3R | 11963833..11964392 | 424..962 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:01 Download gff for
UFO01685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7789004..7789127 | 1..122 | 96 | -> | Plus |
| arm_3R | 7789192..7789492 | 123..423 | 100 | -> | Plus |
| arm_3R | 7789555..7790114 | 424..962 | 95 | | Plus |
